Pairwise Alignments

Query, 229 a.a., OmpA/MotB (NCBI) from Rhodospirillum rubrum S1H

Subject, 294 a.a., flagellar motor protein MotD from Pseudomonas fluorescens FW300-N2C3

 Score = 94.7 bits (234), Expect = 2e-24
 Identities = 78/256 (30%), Positives = 118/256 (46%), Gaps = 60/256 (23%)

Query: 9   RHHDAPEHDDTDAWLISFADMSCLLLGFFAMLASISSVDLVQY----------------- 51
           RH +  EH + + WL+S+AD   LL  FF ++ SISSV+  +Y                 
Sbjct: 5   RHRE--EHVNHERWLVSYADFITLLFAFFVVMYSISSVNEGKYKVISEALIGVFTDSDRA 62

Query: 52  ------------------------EKVKAGIQESIGSREVTKPI-EELRQQTGDVIKSLQ 86
                                   E+V AGI    GS +  K I +++    GD+I S Q
Sbjct: 63  LKPIPIGEERPKTTTPAKPLVKDSEQVDAGI---AGSSDPLKSIADDISAAFGDLISSNQ 119

Query: 87  VEDVVGLGQDQQGLVIEFASSAFYEPGSADIRPTAIPVLEQVIATLNEPRYQGFQIEIQG 146
           +     +  ++  + IE  SS  +  G A     A  ++++V A L   +     I ++G
Sbjct: 120 MT----VRGNELWVEIELNSSLLFGSGDAMPSDMAFNIIDKVAAIL---KPFDNPIHVEG 172

Query: 147 HTDDIPINTAQYPSNWELSGARATRVLRFMLDQGVAKERVLAIAYADVAPKVPNRTPEGQ 206
            TDD PI TAQYP+NWELS AR+  ++R +  QGV   R+ ++ Y +  P   N T EG+
Sbjct: 173 FTDDQPIRTAQYPTNWELSSARSASIVRMLAMQGVNPGRLASVGYGEFQPVANNATAEGR 232

Query: 207 AIPLNQELNRRIAVRV 222
           A       NRR+ + V
Sbjct: 233 A------RNRRVVLVV 242