Pairwise Alignments

Query, 886 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 833 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  440 bits (1132), Expect = e-127
 Identities = 240/545 (44%), Positives = 346/545 (63%), Gaps = 5/545 (0%)

Query: 318 MRLQSAAIAAAANAIVITDGEGRVEWVNEAYHLLSGYERDQIIGTLPAVLAGPSAANPT- 376
           +RL +      + A+++TD   RV  VN+A+  ++G+   ++  +LPA+L  P+  +P  
Sbjct: 282 LRLHAKIFEHNSEAVIVTDAMQRVLSVNKAFCDITGFSEAEVRMSLPALLQ-PTRDDPNL 340

Query: 377 AIEAWPTLRAGQVWRGEIHETHRDGRTYIVDKTITPIVDASGRLSHLVAVDEDVTARKKA 436
           A E    L +   W+GE+ +  ++G TY V  +I+ + +  G LSH   V  D++ RK+A
Sbjct: 341 AAEIQVALASSGAWQGELWDRRKNGDTYPVWVSISSVKNTRGILSHYFLVFSDISERKEA 400

Query: 437 EERIRYLSNYDTLTRLPNRVLFRDRLYQAVVQARRGHGGLAVMFIDLDQFSLVNDTLGHA 496
           E +I  L+ YD LT LPNR L    L QA+++A+R     AV+F+DLD+F  +ND+ GHA
Sbjct: 401 ERQIYRLAYYDALTGLPNRSLLFSLLEQALIEAQRNQTHGAVLFVDLDRFKTINDSFGHA 460

Query: 497 AGDHLLMTIASRINAAAEEADTVARVGGDEFALIQTALTSADSAASLARRLIDVIRTPVD 556
             D LL  +A R+       D VAR+GGDEF +    +T  + AA + ++++D +  P  
Sbjct: 461 PADALLKEVARRLQETLRAEDVVARLGGDEFIVALFDITKREHAALVGQKILDALAEPFQ 520

Query: 557 LGGREVVIGANVGIAIYPQDGTDPDNLMKNADMAMYRAVKSGDDSCCFFSNEMNAEAAVR 616
           +   EV++ A++GIA++P DG D + L++NAD AMYR VK       F+S EMN  +  R
Sbjct: 521 IVHHEVLLTASIGIAVFPDDGRDAETLLRNADTAMYR-VKQTSGGPLFYSQEMNLRSLER 579

Query: 617 LSLEEDLRRALDSGDQLFLHYQLQFCIESGRPVGAEALARWTHPTLGAIPPTRFIPVAED 676
           L LE  LR+A++   +  L+YQ Q  + +GR VGAEAL RW HP  G IPPT FIP+AE+
Sbjct: 580 LKLEGALRKAVER-QEFRLYYQPQVELATGRIVGAEALIRWHHPEQGMIPPTAFIPLAEE 638

Query: 677 SGLILALGDWVLGTALAEYARWRAAGCGRLTIAVNMSAVQFRQKGLVERVTDLLAQHGVP 736
           +GLI+++G WVL  A  +   WR AG   LTIAVN+S  QFR  GL + V + L +H  P
Sbjct: 639 TGLIVSIGAWVLDAACRQGRLWREAGYEDLTIAVNLSPRQFR-PGLSQLVNETLERHAFP 697

Query: 737 PEDLELELTESMLMQDADQAVAQLTALSQAGIRLSIDDFGTGYSSLGYLKLFRVDKLKVD 796
            E+LELE+TE MLM +++  +  L    QAG+RL++DDFGTGYSSL YLK F +D LK+D
Sbjct: 698 GENLELEITEGMLMHNSEAVIQMLEDFHQAGVRLALDDFGTGYSSLAYLKKFPIDNLKID 757

Query: 797 QSFVRDVTEDGNDAVIARAIINLGHSLGLEVIAEGVETPEQMAYLRREGCDVVQGYLMAY 856
           +SFV  +  DG+D+ IA+AII++  +L L VIAEGVET EQ+ +LR  GCD +QGYL + 
Sbjct: 758 RSFVSGIPHDGDDSAIAKAIISMAKNLRLLVIAEGVETEEQLDFLRAAGCDEIQGYLFSP 817

Query: 857 PEPGE 861
           P P E
Sbjct: 818 PVPVE 822



 Score = 33.1 bits (74), Expect = 7e-05
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 15  AATTAGAITILVAL-VRRNQAKGPDRRAREDAEIFLGLSDGLIVLDDGGRVSALNRAAQR 73
           AA  AGA+    A  +R+      + +  E ++I   + D +I +D  G +   N+ A+R
Sbjct: 130 AALLAGALHARQAFNLRQEDLARMEAKVEEQSQILDHIHDSVITMDLSGYIMGWNKGAER 189

Query: 74  MTGQEGEAAVGK 85
           + G     AVG+
Sbjct: 190 LFGYTAAEAVGR 201



 Score = 27.7 bits (60), Expect = 0.003
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 8   FWAALLT------AATTAGAITILVALVRRNQAKGPDRRAREDAEIFLGLSDGLIVLDDG 61
           FWA++        A   AG I  LV +  + +    + + R  A+IF   S+ +IV D  
Sbjct: 246 FWASVSLSLSRNEAGEPAGLIGYLVDITNQLER---EEKLRLHAKIFEHNSEAVIVTDAM 302

Query: 62  GRVSALNRAAQRMTGQEGEAAVGKSARRLL 91
            RV ++N+A   +TG   EA V  S   LL
Sbjct: 303 QRVLSVNKAFCDITG-FSEAEVRMSLPALL 331