Pairwise Alignments

Query, 886 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 953 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  430 bits (1106), Expect = e-124
 Identities = 234/552 (42%), Positives = 336/552 (60%), Gaps = 6/552 (1%)

Query: 312 ERGQSLMRLQSAAIAAAANAIVITDGEGRVEWVNEAYHLLSGYERDQIIGTLPAVLAGPS 371
           +R +  +RL +     +  A ++TD +  +  VN A+   +GY  ++++G  P +L+   
Sbjct: 392 KRQEEELRLAAKVFDTSNEAFLVTDADNNIRSVNRAFCETTGYSAEEVLGRNPRLLSSGH 451

Query: 372 AANPTAIEAWPTLRAGQVWRGEIHETHRDGRTYIVDKTITPIVDASGRLSHLVAVDEDVT 431
                  + W  L +   W+GEI++  + G  Y     I  + D  GR+ + VAV  D++
Sbjct: 452 HDKTFYRQMWEALNSQGYWQGEIYDRRKSGEIYPKWTRINVVKDDQGRVVNHVAVFSDIS 511

Query: 432 ARKKAEERIRYLSNYDTLTRLPNRVLFRDRLYQAVVQA-RRGHGGL---AVMFIDLDQFS 487
            RK  EER+++L+ +D LT LPNR L R RL QAV  A  RG GG+   A++ +DLD F 
Sbjct: 512 DRKALEERLQFLAQHDHLTGLPNRNLLRLRLEQAVESAMERGAGGINPVALLLLDLDHFK 571

Query: 488 LVNDTLGHAAGDHLLMTIASRINAAAEEADTVARVGGDEFALIQTALTSADSAASLARRL 547
            +ND+LGH AGD LL T+  R+     E+ T+ R GGDEF ++          +  A  +
Sbjct: 572 TINDSLGHHAGDQLLRTVVKRLKNILRESSTLCRQGGDEFLIVLPQAQDLARVSRAAETV 631

Query: 548 IDVIRTPVDLGGREVVIGANVGIAIYPQDGTDPDNLMKNADMAMYRAVKSGDDSCCFFSN 607
           +  + TP ++ G  + I  ++GI++ P DG+D D L+K AD A+  A +SG ++  FF+ 
Sbjct: 632 LAALATPFEVDGHPLSITGSIGISLAPDDGSDFDTLLKKADTALVHAKQSGRNAYRFFTE 691

Query: 608 EMNAEAAVRLSLEEDLRRALDSGDQLFLHYQLQFCIESGRPVGAEALARWTHPTLGAIPP 667
            MN     RL+L++ L +AL+   +L L+YQ Q  + SGR VG EAL RW  P  G +PP
Sbjct: 692 AMNVSTLERLTLQQRLHQALER-QELVLYYQPQLDLASGRVVGVEALLRWRTPE-GLVPP 749

Query: 668 TRFIPVAEDSGLILALGDWVLGTALAEYARWRAAGCGRLTIAVNMSAVQFRQKGLVERVT 727
            +FIP+AE++GLI+ +G WV+  A  +   W  AG   +T+AVN+SA+QF +  L+  V 
Sbjct: 750 GKFIPLAEETGLIVPMGAWVIQEACRQARTWLDAGLPPMTMAVNLSALQFHRDNLLITVG 809

Query: 728 DLLAQHGVPPEDLELELTESMLMQDADQAVAQLTALSQAGIRLSIDDFGTGYSSLGYLKL 787
           D L+   +P   LELELTES+L+QDA+  +A L A++  G+ LSIDDFGTGYSSL YLK 
Sbjct: 810 DALSAASLPAASLELELTESILIQDAEATLATLKAMNAMGVLLSIDDFGTGYSSLAYLKR 869

Query: 788 FRVDKLKVDQSFVRDVTEDGNDAVIARAIINLGHSLGLEVIAEGVETPEQMAYLRREGCD 847
           F VDKLK+DQSFVRD+T DG+ A I RA++ +  SL L+ IAEGVET  Q A LR  GCD
Sbjct: 870 FTVDKLKIDQSFVRDITSDGDSAAIVRAVVQMASSLKLKTIAEGVETESQAAALRATGCD 929

Query: 848 VVQGYLMAYPEP 859
            VQGYL A P P
Sbjct: 930 EVQGYLYARPMP 941



 Score = 45.1 bits (105), Expect = 2e-08
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 11/140 (7%)

Query: 315 QSLMRLQSAAIAAAANAIVITDGEGRVEWVNEAYHLLSGYERDQIIGT-----LPAVLAG 369
           Q  ++     I A  + +   D +GR    NEA+    G ER +++G       P  LA 
Sbjct: 273 QEHVQFMHTLIEAIPSPLFYKDAQGRYVGCNEAFLTYLGKERHELLGKSVYDLAPKELAD 332

Query: 370 PSAANPTAIEAWPTLRAGQVWRGEIHETHRDGRTYIVDKTITPIVDASGRLSHLVAVDED 429
             AA    +   P     QV+  E    + DG  + V       +DA GR++ LV V  D
Sbjct: 333 IYAAADRQLFDNP---GKQVY--ESQACYADGSKHDVIYNKATFMDAEGRVAGLVGVMVD 387

Query: 430 VTARKKAEERIRYLSN-YDT 448
           +T RK+ EE +R  +  +DT
Sbjct: 388 ITERKRQEEELRLAAKVFDT 407