Pairwise Alignments

Query, 538 a.a., Type I secretion outer membrane protein, TolC (NCBI) from Rhodospirillum rubrum S1H

Subject, 470 a.a., TolC family type I secretion outer membrane protein (RefSeq) from Shewanella loihica PV-4

 Score =  135 bits (339), Expect = 4e-36
 Identities = 108/449 (24%), Positives = 199/449 (44%), Gaps = 28/449 (6%)

Query: 57  VSIAVASLLVAGLGLSSPVMAETFDEALVSAYQANPTLQARRALLRAVDEQVPQALSDWR 116
           +++A++++L+ G   S     +T ++A+      NP ++      +A +EQV QA++ + 
Sbjct: 14  MALAISAMLIPGAASS-----QTLEQAVAHTLDTNPDIRIAFNRFKAREEQVNQAIAGYM 68

Query: 117 PQVSVQGSTFYQQMDYEPGRKN-----------LDNRPATLGVVLQQNIFRGLRTVAQTD 165
           P V + G   ++Q +    R+            ++     +G  ++Q +F G  T ++ D
Sbjct: 69  PTVDISGGYGWEQTNSPSTRRRAGQGDVDKDGVIELMRGEVGFSIKQMLFDGFYTSSEVD 128

Query: 166 QAKAQVQSERALLRSVEQTVLLNAAQAYFNVIRDQAVLELNINNEQVLRRQLDAANDRFR 225
           +   +  +++  L +  + + L+ A+ Y N IR + VL L   N Q  +   D    R  
Sbjct: 129 RFSFEASADQWALFAAAEDIALDVAKVYVNYIRSEQVLTLAEKNLQSHKDIYDQIKQRTD 188

Query: 226 VGEITRTDVAQADSRLAGAIADRIQAEGTLESSRANYTQVVGHPPEN-IQPPPPYARLPQ 284
            G  +  D++Q   RLA A A+ I A+     ++A + ++V   PEN I P P    LP 
Sbjct: 189 SGLGSVADLSQITGRLARANANVIAAKNNFFDAKAQFIRIVEKEPENLIVPVPDDDMLPT 248

Query: 285 TLEDGLNTALSANPDVIAALYVWRQAQAAIRDQRGKLLPTLNAEVSYSFSHNPSATTEYD 344
            L DGL  A   +P + +A      A+      +    P L+ E+  +++ N      Y 
Sbjct: 249 NLTDGLKVAQENHPILKSAASDISAAENERSSAQSNYYPKLSLELGGNWNDNLDGEDGYS 308

Query: 345 TKTFQ----------AGLNLTVPLYQGGAVYSQIRDAKHRAGQRRLQVDEQREAVIESLT 394
               Q          A + +   L+ GG   ++ ++A ++ G+ +         V+E + 
Sbjct: 309 AFASQNVGGHNNDLIAMVRVKYNLFAGGKDLAREKEAAYKIGEAKEIRQRAYRQVVEGVN 368

Query: 395 SAWETLTSARARVSSYKSQIEAAGIALDGVQREAQVGSRTVLDVLDAEQELLTSRVNLVR 454
            AW        +    +  + AA        ++  +G RT+LD+LD E EL  +R + + 
Sbjct: 369 LAWNAYEMLEPQKLYIRDHVIAAKDTQVAYSQQFNLGQRTLLDLLDTENELFEARKDYLD 428

Query: 455 AERDSAISTYEVLAALGAMTAEDLGLNTP 483
           AE D  IS Y +L A G +  E L +  P
Sbjct: 429 AEYDEIISEYRILNATGRL-LESLRVTRP 456