Pairwise Alignments

Query, 371 a.a., ABC-2 transporter component (NCBI) from Rhodospirillum rubrum S1H

Subject, 378 a.a., ABC transporter permease from Rahnella sp. WP5

 Score =  181 bits (459), Expect = 3e-50
 Identities = 117/373 (31%), Positives = 199/373 (53%), Gaps = 12/373 (3%)

Query: 6   RLKALIVKEFLAILRDPKGRMILIVPPLLQLFVFSYATTLEVKNADIILLNRDSGGWGWE 65
           R++AL VKE   I RDP   +I +V PLL LF+F +   L+     + +L          
Sbjct: 11  RVRALCVKETRQIARDPSSWLIAVVIPLLLLFIFGFGINLDSSRLHVGILLEQQSEEALS 70

Query: 66  LVQRLDGTPTIGRILITGDPAQVRAAIDGQRVLAAVEIGPAFSRDI-EAGRPATVQILLD 124
               +  +P I +  I+ +  ++   +   ++   V I   F++++  AG  A VQ++ D
Sbjct: 71  FAHTISASPYI-QPTISDNRHELIQLMQAGKIRGIVIIPTDFAQNMARAGATAPVQVITD 129

Query: 125 GRRSNAAQIVAGYLNQI--VADLAAETPRGRRTEAKAPTVIARSWFNPNLLSQWAMVPGL 182
           G   N A  V GY+  I  V        RG   E      + R WFNP  +SQ  ++PG 
Sbjct: 130 GSEPNTANFVQGYVEGIWQVWQQQRAKSRGESVEPLIDVQL-RYWFNPAAISQHFIIPGA 188

Query: 183 VAIIALLTGLVVTALSIAREREFGTFDQLMVSPLRTHEILAGKMIPPILIGLAHITAFLV 242
           + II  + G ++T+L +ARE E GT + L+ + +   E+L  K++P  ++G+  +   +V
Sbjct: 189 ITIIMTVIGAILTSLVVAREWERGTMEALLSTQITRTELLLCKLLPYYVLGMLAMLLCMV 248

Query: 243 VSIFVFEIPFRGSLFVLYGSSVVYLAAVVGLGLFISALSMTQ----QQAILGAFMLMVPM 298
           VS+F+  +P+RGSL +L+  + ++L + +G+GL IS ++  Q    Q A+  AF+   P 
Sbjct: 249 VSVFILGVPYRGSLLLLFLITSLFLLSTLGMGLLISTITRNQFNAAQVALNAAFL---PS 305

Query: 299 VLLSGFASPIDNMPEWLQPLTRLDPLRYYLVIVKGLFLKDLALTEVIANVVPLAAIAVVT 358
           ++LSGF   ID+MP  ++ +T + P RY++  ++ LFL     T +I NV+ L   AV+ 
Sbjct: 306 IMLSGFIFQIDSMPAIIRAVTYIIPARYFVNTLQTLFLAGNISTVLIVNVLCLIVSAVMF 365

Query: 359 LGAAAWLFRRRME 371
           +G  A   +RR++
Sbjct: 366 IGLTALKTKRRLD 378