Pairwise Alignments

Query, 703 a.a., ATP-dependent DNA helicase RecG (NCBI) from Rhodospirillum rubrum S1H

Subject, 692 a.a., DNA helicase RecG from Vibrio cholerae E7946 ATCC 55056

 Score =  457 bits (1175), Expect = e-132
 Identities = 285/687 (41%), Positives = 400/687 (58%), Gaps = 41/687 (5%)

Query: 12  PLTSLKGAGKTMAPLIARLIGGDKVVDLLWHLPSGLVDR-RFSPLIA------EAPDGVV 64
           PL  L G G  +A  + + +G   V DLL+HLP    DR R  P++        A  G V
Sbjct: 9   PLCELSGVGAKVAEKLEK-VGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKV 67

Query: 65  VTLTVVVEAHQEPPPRSPSPYRVVCRDASGFVTLVFFHGRARYLNDLLPVGETRVISGKV 124
           + +  +    +           V   D +G +TL FF+  A   N+    G+     G++
Sbjct: 68  MAVDTLFGKRKM--------LTVKISDGNGTLTLRFFNFTAAMKNNFAE-GKFVHAYGEI 118

Query: 125 ERFGGAPQIVHPTH--VVPLAEAEAVCRVEPVYPLSGGVAGKVLARLIAQALDDIPDPAA 182
           +R     +I+HP +    P    +    + PVYP + G+    L  L  QAL  +   A 
Sbjct: 119 KRGNQGLEIIHPDYKFFTPAQTPDVEPNLTPVYPTTEGLRQLTLRNLTDQALVLLEKSAV 178

Query: 183 W---PDEWIDAPLKAREGWPGWIDALRAVHAPEEAEDLR----PDHPARRRLAYDELLAT 235
               P    D  +   +       AL+ +H P    DLR      HPA+ RL  +ELLA 
Sbjct: 179 QELLPSGLYDQQMTLAQ-------ALKIIHRPSADIDLRLFEQGRHPAQIRLIMEELLAQ 231

Query: 236 QLALLLVRRAARTVRGRPIVGTGALRAKVLAALPFALTGAQSRSLAEIDGDMASPARMLR 295
            L++L +R   +     P+     L+ ++LA LPF+ T AQ R +AEI+ D+A P  M+R
Sbjct: 232 NLSMLAIRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPHPMMR 291

Query: 296 LLQGDVGSGKTVVALLTMLTAVEAGAQAALMAPTEILARQHIETLAPLCASAGVRLGLLT 355
           L+QGDVGSGKT+VA L  + A+E G Q ALMAPTE+LA QH    A      G+++G L 
Sbjct: 292 LVQGDVGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMGIQVGWLA 351

Query: 356 GRDKGRARAALLEALAAGEIDILVGTHALFQDDVVFAALAVVVVDEQHRFGVHQRLALSD 415
           G+ KG+AR   L  +A+GE+ ++VGTHALFQ+ V F  LA+V++DEQHRFGVHQRL L +
Sbjct: 352 GKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHRFGVHQRLELRE 411

Query: 416 KGRAVDV----LVMTATPIPRTLTLTHYGDMDISRLDEKPPGRLPADTRVLPIDRLDDVI 471
           KG         L+MTATPIPRTL +T Y D++ S +DE PPGR P  T  +P  + D+++
Sbjct: 412 KGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIV 471

Query: 472 AAVARA-IDGGAKVYWVCPLIEDSETGDMAAAVDRQALLADRLGPRLGPRVGLVHGRMKP 530
             +  A ++ G + YWVC LI++SE  +  AA +    L  +L P +  ++GLVHGRMKP
Sbjct: 472 ERIRHACLNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKL-PEV--KIGLVHGRMKP 528

Query: 531 GEKDAVMEAFSGNGLDLLVATTVIEVGVNVPSATVMVIEHAERFGLAQLHQLRGRIGRGG 590
            EK AVM+AF  N L LLVATTVIEVGV+VP+A++M+IE+ ER GLAQLHQLRGR+GRG 
Sbjct: 529 AEKQAVMQAFKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGT 588

Query: 591 GRSTCLLLYAPPLGETARARLETMRRTDDGFEIAEEDLRLRGAGEVLGTRQSGLPVFRLI 650
             S C+LL+  PL +TA+ RL  +R ++DGF IA+ DL +RG GE+LGT+Q+GL  F++ 
Sbjct: 589 VASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIA 648

Query: 651 DPLLAEDLLAIARKQAEVIVETDPDLA 677
           D +  + L+   ++ A  I E  P  A
Sbjct: 649 DLVRDQQLVPQVQRIARHIHERYPQNA 675



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 645 PVFRLIDPLLAEDLLAIARKQAEVIVETDPDLAGPH 680
           PV +L   LLA+   +  + Q  V+ E + DLA PH
Sbjct: 252 PVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPH 287