Pairwise Alignments

Query, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

Subject, 1152 a.a., transcription-repair coupling factor from Rhodanobacter denitrificans FW104-10B01

 Score =  781 bits (2017), Expect = 0.0
 Identities = 467/1150 (40%), Positives = 671/1150 (58%), Gaps = 46/1150 (4%)

Query: 25   ALVLGELAARPGVPAVLHVARDDVRLARLAETIAFFHPAVEILEFPAWDCVPYDRVSPNV 84
            AL+L E AAR     ++ VARD  R   L   +  F   + +L FP W+ +PYD  SP+ 
Sbjct: 29   ALLLAE-AARAHDGLLVVVARDTQRAQALEAELKIFAGGLPVLHFPDWETLPYDVFSPHP 87

Query: 85   EIVARRLETLSRLSEEPTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVGGRLDLGK 144
            EIV++R+ TL RL   P+ + G  +++   + ++QR+ P   +         G +LDL  
Sbjct: 88   EIVSQRVATLYRL---PSVKRG--VLVVPVATLMQRIAPHSHITGSGLVLAKGQKLDLAG 142

Query: 145  LLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLRSFDPVSQ 204
                L   GY    QV EPG++AVRG ++DIFP G  EP R++LF DE++S+RSFDP +Q
Sbjct: 143  EQRRLEASGYRHVPQVAEPGDFAVRGALLDIFPMGTAEPYRIELFDDEVESIRSFDPETQ 202

Query: 205  RTTGQRDALILRPMSEVVLDKESISRFRSGYRELFGTPSAADALYEAISAGLPFMGMEHW 264
            R+    D + L P  E  L +E+   FR   RE F        LY+ +  G+   G+E++
Sbjct: 203  RSQQPVDRVELLPAREFPLTEEAAKEFRGNLRERFPIDVRRCPLYQDMKEGVTPGGIEYY 262

Query: 265  LPLFHEGMDTLFAYVPDGPV-TLDPGLDGALRSRQDQIFEYFEARRLMESVGDGAKASEK 323
            LPLF +   TLF Y+ D  +  L  G   A      Q  E ++ R         A   E+
Sbjct: 263  LPLFFQQTATLFDYLADDALFVLGEGAGEAADQFWAQTAERYDQR---------AHDIER 313

Query: 324  PGGGMIYHALPPPRMFLEEDEFLRHCAGRPGAAFSAYAAPDVATEKGVVGDFLGRPGHEF 383
            P        LPP  ++L  ++ LR    +           + A + G       +P  E 
Sbjct: 314  P-------VLPPAELYLPPEQ-LRERLNKRLRVEVVEPGHEHAVDTGT------QPAPEL 359

Query: 384  ADIRARAGGNVFDALRDHAQALRAAGKRVVLTAATMGARERMTGVLREHGLSPIVTAETW 443
                 R G     +LR     L +   RV++ A + G RE +   L   G+ P    + W
Sbjct: 360  P--LNRKGEEPGTSLR---HFLASYPGRVLIAADSAGRREALVETLAGAGMKP-DNVDGW 413

Query: 444  AEALERAKKATVVLTLILDRGF--ETPDLAVISEADVLGDRL-SRPVRKKKLG-----DK 495
               L    +   +    L++GF    P + V++E ++ G+R+ S   RK++ G     + 
Sbjct: 414  TSFLAEDAQRFAITIASLEQGFALTKPAITVLTERELYGERVRSERERKRRRGTARDPEA 473

Query: 496  FIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRLYVPVENIEVL 555
             I D++ L+ G  +VHVDHG+G+Y+GL ++  GG   + L + YA  ++LYVPV  + ++
Sbjct: 474  IIRDLTELTPGAPIVHVDHGVGRYQGLVSMDVGGMDGEFLTIEYARGDKLYVPVAQLGLV 533

Query: 556  SRY-GSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAARQLKVGEVISPPEGL 614
            SRY G+      L  LGG AW+  + K  +++RD+A +L+ + A RQ + GE +     L
Sbjct: 534  SRYSGTAPELAPLHSLGGDAWERARRKAAEKVRDVAAELLAIYAQRQARGGESLPIDRQL 593

Query: 615  YDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFATAMSG 674
             +EF + FP+ ET DQ  AI   LDDLAA R MDR+ICGDVGFGKTEVALRAAFATA +G
Sbjct: 594  VEEFGSSFPFEETPDQESAIEAVLDDLAAPRAMDRVICGDVGFGKTEVALRAAFATATAG 653

Query: 675  RQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTLDIVVG 734
            RQVAV+VPTTLLA+QH+  F +RFA  PVR+  LSR  +A++     + +A G +D++VG
Sbjct: 654  RQVAVLVPTTLLAQQHYRNFADRFADWPVRVDVLSRFKSAKEVNEALKRLADGQIDVIVG 713

Query: 735  THALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQLALTG 794
            TH LL   V+F++LGL+IVDEEQ FGV  KE+LK++RA+V +LT+TATPIPRTL +A+ G
Sbjct: 714  THKLLQPDVKFKNLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMAG 773

Query: 795  VREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDKVMERL 854
            +R++S+IATPP  R AVRTF+  +DP  +REA+ RE  RGGQ +++   +  I++ +  L
Sbjct: 774  LRDLSLIATPPAHRTAVRTFISAWDPATIREALQRELSRGGQVYFLHNEVQSIERTVREL 833

Query: 855  TTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRANTIIIHRAD 914
              LVPD R  +AHGQM    LE VM  F   +++VLV T I+E+G+DIP ANTIII RAD
Sbjct: 834  EELVPDARIRIAHGQMPERELEGVMADFHRQRFNVLVCTTIIETGIDIPTANTIIIDRAD 893

Query: 915  MFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGAGFTLASHD 974
             FGLAQL+QLRGRVGR+  R YAYL +P  R+++  A KRL+ + +L+ LGAGFTLA+HD
Sbjct: 894  RFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSITADAQKRLEALASLEELGAGFTLATHD 953

Query: 975  LDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREGPGVE-EASGAWSPQIQLGTP 1033
            L+IRGAG LLGDEQSG I+E+G  LY +LL+ AV A + G   + + S     +++L  P
Sbjct: 954  LEIRGAGELLGDEQSGQIQEIGFGLYTELLDRAVRALKSGKVPDFDLSSEHETEVELHLP 1013

Query: 1034 ILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVENLLKVVTIKVL 1093
             LIPD Y+ D+  RL LY+RIA    E E+ ++  EM+DRFG LP+    L  V ++K++
Sbjct: 1014 ALIPDDYLPDVHHRLTLYKRIASARSEDELRDLQVEMIDRFGLLPEPTRQLFAVASLKLM 1073

Query: 1094 CRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRFIGQNVATVKLRPDHKLVYRRDWEVAR 1153
                   K+D G  G  + FR+    NP  +++ I +     KL    KL    +   A 
Sbjct: 1074 ATPLGIRKLDFGANGGRIVFREKPEVNPMTIIQLIQRQPRVYKLDGQDKLKVILELPGAS 1133

Query: 1154 ERIQGLGKLM 1163
            ERI+   +L+
Sbjct: 1134 ERIRSAQELL 1143