Pairwise Alignments

Query, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

 Score =  787 bits (2032), Expect = 0.0
 Identities = 459/1157 (39%), Positives = 680/1157 (58%), Gaps = 43/1157 (3%)

Query: 19   LPEGFDALVLGELAARPGVPAVLHVARDDVRLARLAETIAFFHPAVEILEFPAWDCVPYD 78
            LP    +L + E A+      +L  A D     RL E +AFF P + +L FP W+ +PYD
Sbjct: 21   LPGAALSLAIAEAASNAKRFTLLLTA-DSQSAERLQEELAFFAPGLPVLHFPDWETLPYD 79

Query: 79   RVSPNVEIVARRLETLSRLSEEPTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVGG 138
              SP+ +IV++R+  L +L E       G LV+   +A L R+ P++ L        VG 
Sbjct: 80   IFSPHQDIVSQRISALYQLPE----LSHGVLVVPITTA-LHRLAPKRFLLGSSLVLDVGQ 134

Query: 139  RLDLGKLLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLRS 198
            +LD+ ++   L   GY   + V E GE+AVRG ++D+FP G+P P R+DLF DE+++LR+
Sbjct: 135  KLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPYRIDLFDDEIETLRT 194

Query: 199  FDPVSQRTTGQRDALILRPMSEVVLDKESISRFRSGYRELFGTPSAADALYEAISAGLPF 258
            FDP +QR+  + +++ L P  E  L KE+++ FR+ +RE F        +Y+ +S G+  
Sbjct: 195  FDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFRRCPIYQDLSTGITP 254

Query: 259  MGMEHWLPLFHEGMDTLFAYVP-DGPVTLDPGLDGALRSRQDQIFEYFEARRLMESVGDG 317
             G+E++LPLF+E   TLF Y+P D  V   PG++ A       +   +E RR+       
Sbjct: 255  AGIEYYLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQFWSDVRNRYEERRV------- 307

Query: 318  AKASEKPGGGMIYHALPPPRMFLE-EDEFLRHCAGRPGAAFSAYAAPDVATEKGVVGDFL 376
                E+P        LPP  +F+  ED F R         +    A     E G+  +  
Sbjct: 308  --DPERP-------LLPPAELFMPVEDCFARL------KLWPRVVASQQDVESGIGRERF 352

Query: 377  GRPGHEFADIRARAGGNVFDALRDHAQALRAAGKRVVLTAATMGARERMTGVLREHGLSP 436
                     I ++A     + L    Q L +   RV+ TA + G RE +  +L    L P
Sbjct: 353  NAQALPELAIESKAS----EPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRP 408

Query: 437  IVTAETWAEALERAKKATVVLTLILDRGFETPDLAVISEADVLGDRLSRPVRKKKL---G 493
                + W + L   ++  + +   LD G +  D+A+++E+ + G R+ +  R++K    G
Sbjct: 409  -QEVDGWTDFLASDQRLAITIAP-LDEGLQLDDVALVAESPLFGQRVMQRRRREKSRDGG 466

Query: 494  DKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRLYVPVENIE 553
            +  I +++ L EG  VVH+DHG+G+Y+GL TL   G   + L + YA+  +LYVPV ++ 
Sbjct: 467  ENVIKNLTELREGSPVVHIDHGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLH 526

Query: 554  VLSRY-GSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAARQLKVGEVISPPE 612
            +++RY GS+ A   L +LG   WQ  K K  +++RD+A +L+ + A R  + G     P+
Sbjct: 527  LIARYTGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQ 586

Query: 613  GLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFATAM 672
              Y+ FAA FP+ ET DQ  AI    +DL + +PMDRL+CGDVGFGKTEVA+RAAF    
Sbjct: 587  VDYETFAAGFPFEETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVH 646

Query: 673  SGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTLDIV 732
             GRQV V+VPTTLLA+QH+ +F++RFA  PVR+  +SR  +A++ +    E+A G +DI+
Sbjct: 647  GGRQVGVLVPTTLLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDIL 706

Query: 733  VGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQLAL 792
            +GTH LL   V+F +LGL+I+DEE  FGV  KE+LK +R++V +LTLTATPIPRTL +++
Sbjct: 707  IGTHKLLQDDVKFSNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSI 766

Query: 793  TGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDKVME 852
             G+R++SIIATPP  RL+VRTFV+     V++EA+LRE  RGGQ +Y+   +  I+K   
Sbjct: 767  AGMRDLSIIATPPARRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAA 826

Query: 853  RLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRANTIIIHR 912
             L  LVP+ R  + HGQM    LE+VM+ F   +++VLVA+ I+E+G+D+P ANTIII R
Sbjct: 827  DLQALVPEARVAIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIER 886

Query: 913  ADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGAGFTLAS 972
            AD FGLAQL+QLRGRVGR+  + YAYL  P  + ++  A KRL+ +     LGAGF LA+
Sbjct: 887  ADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLAT 946

Query: 973  HDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREG--PGVEEASGAWSPQIQL 1030
            HDL+IRGAG LLG+ QSG I+ VG  LY ++LE AV A R+G  P +E+  G   P+I L
Sbjct: 947  HDLEIRGAGELLGEGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGG-GPEINL 1005

Query: 1031 GTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVENLLKVVTI 1090
              P LIP+ Y+ D+  RL LY+RIA   DE  + E+  EM+DRFG LP+  +NL+++  +
Sbjct: 1006 RLPALIPEDYLPDVHARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLL 1065

Query: 1091 KVLCRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRFIGQNVATVKLRPDHKLVYRRDWE 1150
            K+   +    K+DAGP+G  + F  +   +P  L++ I       K        ++   E
Sbjct: 1066 KLQAEKLGITKIDAGPQGGRIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPME 1125

Query: 1151 VARERIQGLGKLMRTLA 1167
               ER   L  L+  LA
Sbjct: 1126 RPEERFNTLEALLERLA 1142