Pairwise Alignments

Query, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score =  777 bits (2006), Expect = 0.0
 Identities = 455/1154 (39%), Positives = 667/1154 (57%), Gaps = 52/1154 (4%)

Query: 25   ALVLGELAARPGVPAVLHVARDDVRLARLAETIAFFHPAVEILEFPAWDCVPYDRVSPNV 84
            AL + ELA       +L V      L  L E   F H  V +  FP W+ +PYD  SP+ 
Sbjct: 30   ALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVAL--FPDWETLPYDNFSPHQ 87

Query: 85   EIVARRLETLSRLSEEPTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVGGRLDLGK 144
            +I++ R+   SRL + P+   G  + +   S +LQR  PR  L +     + G    L K
Sbjct: 88   DIISDRI---SRLYQLPSLTRG--ITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDK 142

Query: 145  LLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLRSFDPVSQ 204
            L   L    Y   +QV  PGEYA RG I+D+FP G+ +P R+D F DE+D++R+FDP +Q
Sbjct: 143  LRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQ 202

Query: 205  RTTGQRDALILRPMSEVVLDKESISRFRSGYRELFGTPSAADALYEAISAGLPFMGMEHW 264
            R+  + D + L P  E      +I  FR+ +R+ F      +++Y  +S G    G+E+W
Sbjct: 203  RSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEYW 262

Query: 265  LPLFHEGMDTLFAYVPDGPVTLDPGLDGALRSRQDQIFEYFEARRLMESVGDGAKASEKP 324
             PLF E  +TLF Y+P     L   + G L    DQ     + R    ++          
Sbjct: 263  QPLFFEHSETLFDYLPANSQLL---VVGELEKAIDQFLTDVDYRYDQRNIDP-------- 311

Query: 325  GGGMIYHALPPPRMFLEEDEFLRHCAGRPGAAFSAYAAPDVATEKGVVGDFLGRPGHEFA 384
                +   LPP  ++L +DE   H              P V      +    GR   +  
Sbjct: 312  ----LRPLLPPNELWLRKDELFAHFK----------TLPQVQLTSSPIELRAGRMNAQVQ 357

Query: 385  DIRARAGGNVFDALRDHAQALRAAGK----RVVLTAATMGARERMTGVLREHGLSPIVTA 440
             +   A   V    ++   ALR   +    +++ +  + G RE +  +L+   L P  + 
Sbjct: 358  PLPVLA---VEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRP-QSQ 413

Query: 441  ETWAEALERAKKATVVLTLILDRGFETPD--LAVISEADVLGDRLSRPVRKKKL-----G 493
              ++ A ++ +K ++VL    +RGF   D  +A+I E+D+LGDR+ +  RKK        
Sbjct: 414  NDFSLACQQTEKYSLVLGSA-ERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNS 472

Query: 494  DKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRLYVPVENIE 553
            D  I +++ L  G  VVH+DHGIG+Y GL+TL AGG   + + + Y +  +LYVPV ++ 
Sbjct: 473  DAVIRNLAELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLN 532

Query: 554  VLSRY-GSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAARQLKVGEVISPPE 612
            ++SRY G  +   QL KLGG AW   + K  +++RD+A +L+ V A R++K G       
Sbjct: 533  LISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDR 592

Query: 613  GLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFATAM 672
              Y  F A FP+ ETDDQ  AI   L D+   + MDRL+CGDVGFGKTEVA+RAAF    
Sbjct: 593  EQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATD 652

Query: 673  SGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTLDIV 732
            +G+QVAV+VPTTLLA+QH   F++RFA LP+R+  LSR  +A++ K + +++A G +DI+
Sbjct: 653  NGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDIL 712

Query: 733  VGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQLAL 792
            VGTH LL+  +RF DLGLLIVDEE  FGV  KE++K MRADV +LTLTATPIPRTL +A+
Sbjct: 713  VGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAM 772

Query: 793  TGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDKVME 852
            +G+R++SIIATPP  RLA++TFV   +  V+REA+LRE  RGGQ +++  ++  IDKV  
Sbjct: 773  SGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAA 832

Query: 853  RLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRANTIIIHR 912
             L  LVP+ R  VAHGQM    LE+VM  F   ++++LV T I+E+G+D+P ANTII+ R
Sbjct: 833  DLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDR 892

Query: 913  ADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGAGFTLAS 972
            AD  GLAQL+QLRGRVGR+  + YAYL  PP + ++K A KRL+ + +L+ LGAGFTLA+
Sbjct: 893  ADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLAT 952

Query: 973  HDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREG--PGVEEASGAWSPQIQL 1030
            HDL+IRGAG LLG+EQSG I+ VG  LY ++LE+AV A + G  P +++       ++++
Sbjct: 953  HDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLRE-QTEVEM 1011

Query: 1031 GTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVENLLKVVTI 1090
              P L+P+ Y+ D+  RL +Y++IA V  + E+ E+  E++DRFG LPD   NLL +  +
Sbjct: 1012 RLPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAEL 1071

Query: 1091 KVLCRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRFIGQNVATVKLRPDHKLVYRRDWE 1150
            K+   R    K++A  +G  + F  N   NP  LV+ +      + +    KL +     
Sbjct: 1072 KLNAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLV 1131

Query: 1151 VARERIQGLGKLMR 1164
                RIQ +  +++
Sbjct: 1132 ERSARIQFVADMLK 1145