Pairwise Alignments

Query, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

Subject, 1147 a.a., transcription-repair coupling factor from Rahnella sp. WP5

 Score =  765 bits (1976), Expect = 0.0
 Identities = 448/1154 (38%), Positives = 666/1154 (57%), Gaps = 57/1154 (4%)

Query: 25   ALVLGELAARPGVPAVLHVARDDVRLARLAETIAFFHPAVEILEFPAWDCVPYDRVSPNV 84
            AL   +++ R   P +L +A D     RL + I  F    ++L    W+ +PYD  SP+ 
Sbjct: 28   ALECAQISERHTGPILL-IAPDMQNALRLRDEIQQFTDN-KVLSIADWETLPYDSFSPHQ 85

Query: 85   EIVARRLETLSRLSEEPTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVGGRLDLGK 144
            EI++ RL +L +L   PT + G  +++   + ++QRV P + L       + G +L   K
Sbjct: 86   EIISSRLSSLYQL---PTMERG--IIILPVNTLMQRVCPHEFLHGHALVMKKGQQLSRDK 140

Query: 145  LLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLRSFDPVSQ 204
            L   L + GY   +QVME GE+A RG ++D++P G+ EP R+D F DE+DSLR FD  +Q
Sbjct: 141  LRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEEPYRIDFFDDEIDSLRIFDVDTQ 200

Query: 205  RTTGQRDALILRPMSEVVLDKESISRFRSGYRELFGTPSAADALYEAISAGLPFMGMEHW 264
            RT  + + + L P  E   DK +I  FRS +RE F     A+ +Y+ +S G    G+E+W
Sbjct: 201  RTLSEVEHINLLPAHEFPTDKNAIELFRSQWREKFEVRRDAEHVYQQVSKGTFPAGIEYW 260

Query: 265  LPLFH-EGMDTLFAYVPDGPVTLDPG-LDGALRSRQDQIFEYFEARRLMESVGDGAKASE 322
             PLF  + + TLF+Y+P+  + L+ G L+ A         + +E+RR+            
Sbjct: 261  QPLFFSQPLTTLFSYLPENTLVLNTGDLEAAAERFWQDACQRYESRRV------------ 308

Query: 323  KPGGGMIYHALPPPRMFLEEDEFLRHCAGRPGAAFSAYAAPDVATEKGVVGDFLGRPGHE 382
                  +   L P  ++L  +         P       + P  A    +  + L      
Sbjct: 309  ----DPMRPLLEPENLWLRVESLFTELKAWPRVQLRTDSLPKKAANTNLSYEKL------ 358

Query: 383  FADIRARAGGNV-FDALRDHAQALRAAGKRVVLTAATMGARERMTGVLREHGLSPIVTAE 441
              D+  +       D LR   ++   +   +V +  + G RE +  +L    L P +   
Sbjct: 359  -PDLSVQPQNKAPMDNLRRFNESFAGS---LVFSVESEGRRETLQDLLARIKLMPTL--- 411

Query: 442  TWAEALERAKKATVVLTLIL----DRGFETPD--LAVISEADVLGDRLSR---PVRKKKL 492
                 + R ++A +    I+    +RGF   D  LA+I E+D+LG+R++R     R+   
Sbjct: 412  -----ITRIEEADIAGRYIMIGACERGFLDADKQLALICESDLLGERVARRRQDSRRSIN 466

Query: 493  GDKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRLYVPVENI 552
             D  I +++ L  G  VVHV+HG+G+Y GL TL  GG   + L + YA  ++LYVPV ++
Sbjct: 467  TDTLIRNLAELRPGQPVVHVEHGVGRYLGLTTLETGGITAEYLILTYAGEDKLYVPVSSL 526

Query: 553  EVLSRY-GSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAARQLKVGEVISPP 611
             ++SRY G       L KLGG AW   + K  +++RD+A +L+ + A R+ K G      
Sbjct: 527  HLISRYAGGADESAPLHKLGGEAWSKARQKAAEKVRDVAAELLDIYAQREAKSGFAFKHD 586

Query: 612  EGLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFATA 671
            +  Y  F   FP+  T DQ +AI   L D+     MDRL+CGDVGFGKTEVA+RAAF   
Sbjct: 587  KAQYQLFCQAFPFETTPDQAQAINAVLTDMTQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646

Query: 672  MSGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTLDI 731
             + +QVAV+VPTTLLA+QH   F++RFA  PVRI  +SR  +A++   V E+   G +DI
Sbjct: 647  SNNKQVAVLVPTTLLAQQHFDNFRDRFASWPVRIEMMSRFRSAKEQNVVLEDAVEGKVDI 706

Query: 732  VVGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQLA 791
            ++GTH LL   +R++DLGLLIVDEE  FGV HKER+K MRADV +LTLTATPIPRTL +A
Sbjct: 707  IIGTHKLLQTDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMA 766

Query: 792  LTGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDKVM 851
            ++G+R++SIIATPP  R+AV+TFV  +D +VVREAILRE  RGGQ +Y+   + +I+K  
Sbjct: 767  MSGMRDLSIIATPPARRMAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAS 826

Query: 852  ERLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRANTIIIH 911
            +RL  LVP+ R  + HGQM    LE VM  F   +++VLV T I+E+G+DIP ANTIII 
Sbjct: 827  QRLAELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886

Query: 912  RADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGAGFTLA 971
            RAD FGLAQL+QLRGRVGR+  + YAYL  PP + +S  A KRL+ + +L+ LGAGF LA
Sbjct: 887  RADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAMSADAHKRLEAIASLEDLGAGFALA 946

Query: 972  SHDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREG--PGVEEASGAWSPQIQ 1029
            +HDL+IRGAG LLG+ QSG +  +G  LY +LLE AV A +EG  P +E+ + +   +++
Sbjct: 947  THDLEIRGAGELLGEGQSGQMTSIGFSLYMELLENAVEALKEGREPSLEDLTTS-QTEVE 1005

Query: 1030 LGTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVENLLKVVT 1089
            +  P L+P+ ++ D+  RL LY+RIA    E E+DE+  E++DRFG LPD   NLL +  
Sbjct: 1006 MRMPALLPEDFIPDVNTRLSLYKRIASAKTEGELDELRVELIDRFGTLPDGARNLLLIAV 1065

Query: 1090 IKVLCRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRFIGQNVATVKLRPDHKLVYRRDW 1149
            +++  +     +++   +G  + F D    +PG L+  + +     +L    KL +  D 
Sbjct: 1066 LRLKAKELGIRRIEGNERGGFIEFGDKNRVDPGFLIGLLQKQPQVYRLDGPTKLKFVLDL 1125

Query: 1150 EVARERIQGLGKLM 1163
                +R++ +G ++
Sbjct: 1126 TDRPKRLKFVGDML 1139