Pairwise Alignments

Query, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

Subject, 1172 a.a., transcription-repair coupling factor from Rhodopseudomonas palustris CGA009

 Score = 1224 bits (3168), Expect = 0.0
 Identities = 634/1175 (53%), Positives = 825/1175 (70%), Gaps = 20/1175 (1%)

Query: 6    ESLAVGRRIEAAGLPEGFDALVLGELA----ARPGVPAV--LHVARDDVRLARLAETIAF 59
            E L  G+ +  A + EG + L++ +LA    A+P  PAV    + RD  R+ +LA ++ F
Sbjct: 10   EQLTPGKALTFANVAEGAEGLIIADLARAVAAKPKAPAVSLTVICRDGPRMQQLARSLEF 69

Query: 60   FHPAVEILEFPAWDCVPYDRVSPNVEIVARRLETLSRLSEEPTRQPGGRLVLTTASAILQ 119
            F P +E+L+FPAWDC PYDRVSP+  I+A+R+ TL++LS   T      +VLTT +A +Q
Sbjct: 70   FAPDLEVLQFPAWDCQPYDRVSPHAGILAQRVTTLAKLSRL-TGSDKPLIVLTTVNAAVQ 128

Query: 120  RVPPRQILERGVFSARVGGRLDLGKLLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPG 179
            RVP R+I+     S   G  + +  ++  L  +GY R+  V E GEYAVRGGI+D+FP G
Sbjct: 129  RVPVREIIAAQALSVAPGNVVPMDSIVAWLEHNGYSRASTVREAGEYAVRGGILDLFPAG 188

Query: 180  APEPLRLDLFGDELDSLRSFDPVSQRTTGQRDALILRPMSEVVLDKESISRFRSGYRELF 239
              +P+R D FGD+L+S+R+FD  +QRT      L L P+SE  L  E+I RFR GY   F
Sbjct: 189  LDQPVRFDFFGDQLESIRTFDAETQRTLHTMRGLDLVPVSEFQLVTETIRRFRMGYVAAF 248

Query: 240  GTPSAADALYEAISAGLPFMGMEHWLPLFHEGMDTLFAYVPDGPVTLDPGLDGALRSRQD 299
            G P   D LY A+S G    GMEHWLPLF E MDTLF Y+   PV ++P  + A R R  
Sbjct: 249  GAPHPDDQLYAAVSEGRRHPGMEHWLPLFQERMDTLFDYLKGTPVAIEPQSEDAARERFK 308

Query: 300  QIFEYFEARRLMESVGDGAKASEKPGGGMIYHALPPPRMFLEEDEFLRHCAGRPGAAFSA 359
            QI +Y++ARR         +A E+PG G IY  LPP R++L + E+     G   A  + 
Sbjct: 309  QIADYYDARR---------EAMEQPGSGAIYKPLPPDRLYLTDSEWTARLEGVALARLTP 359

Query: 360  YAAPDVATEKGVVGDFLGRPGHEFADIRARAGGNVFDALRDHAQALRAAGKRVVLTAATM 419
            +A PD  ++   V D   R G  FA  RA +  NVF+ L  H  AL+AA K+VV+   + 
Sbjct: 360  FALPDDTSD---VIDAGARAGRNFAPERADSNVNVFETLVAHVYALQAARKKVVIALWSE 416

Query: 420  GARERMTGVLREHGLSPIVTAETWAEALERAKKATVVLTLILDRGFETPDLAVISEADVL 479
            G+R+RM  +L++H L  + +  +W       +  T++  + L+ GFET   AVI+E DVL
Sbjct: 417  GSRDRMASMLKDHKLVALTSVNSWRTVQATPRNETMLAVVGLESGFETDAFAVITEQDVL 476

Query: 480  GDRLSRPVRKKKLGDKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVY 539
            GDRL R  +  K  D FI ++++LS GD+VVHV+HGIG++ GL+TL  GGAPHDC+ + Y
Sbjct: 477  GDRLVRQRKASKKLDNFISEVTSLSTGDIVVHVEHGIGRFVGLQTLEVGGAPHDCVELHY 536

Query: 540  ADNNRLYVPVENIEVLSRYGSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAA 599
            A++ +L++PVENIE+LSRYGS+   V+LDKLGG  WQARKAKLK RIR +A +LI VAA 
Sbjct: 537  ANDTKLFLPVENIELLSRYGSDGTSVELDKLGGSGWQARKAKLKNRIRQIAGELIKVAAE 596

Query: 600  RQLKVGEVISPPEGLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGK 659
            R L+    +     LYDEF ARFPY ET+DQL AI   L DL  G PMDRL+CGDVGFGK
Sbjct: 597  RHLREAPKLPIQPQLYDEFCARFPYDETEDQLAAINAALGDLEKGTPMDRLVCGDVGFGK 656

Query: 660  TEVALRAAFATAMSGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKA 719
            TEVALRAAFA A+ G+QVAVVVPTTLLARQH  TF ERF G PV +GQ SRLV+A++   
Sbjct: 657  TEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFRGFPVNVGQASRLVSAKELSQ 716

Query: 720  VKEEMAAGTLDIVVGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTL 779
            VK+ +A GT DIVVGTHALL K+++F+DLGL+IVDEEQHFGV HKE+LKQ+R++VHVLTL
Sbjct: 717  VKKGIADGTTDIVVGTHALLGKSIKFKDLGLVIVDEEQHFGVTHKEKLKQLRSEVHVLTL 776

Query: 780  TATPIPRTLQLALTGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFY 839
            +ATPIPRTLQLA+TGVR++SIIA+PPVDRLAVRTFV P DP+++REA+LRER+RGGQ FY
Sbjct: 777  SATPIPRTLQLAMTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFY 836

Query: 840  VCPRLTDIDKVMERLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESG 899
            V PR+ D+ +V + L   VP+++  VAHGQM P+ +E++M+AF DG++D+L++T IVESG
Sbjct: 837  VVPRIDDLAEVKDFLDKHVPEMKVAVAHGQMPPAVIEDIMSAFYDGKFDILLSTTIVESG 896

Query: 900  LDIPRANTIIIHRADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQ 959
            LDIP ANT+I+HRADMFGLAQLYQLRGRVGR++ R YA  TLP    ++  A +RL V+Q
Sbjct: 897  LDIPNANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPQ-HNITAQAERRLKVLQ 955

Query: 960  TLDTLGAGFTLASHDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREGPGVEE 1019
            +L+TLGAGF LASHDLDIRGAGNLLG+EQSGHIKEVG ELYQQ+LEEA+   + G   E 
Sbjct: 956  SLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAITNLKAGIVDEP 1015

Query: 1020 ASGAWSPQIQLGTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPD 1079
             +  WSPQI +G P+LIPD +V DL +RL LYRR+A +  + EID  AAE+ DRFGPLPD
Sbjct: 1016 VADRWSPQITIGMPVLIPDDFVADLSVRLSLYRRLADLDTDEEIDNFAAELRDRFGPLPD 1075

Query: 1080 EVENLLKVVTIKVLCRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRFIGQNVATVKLRP 1139
            EV  L K+  IK  CRRAN EKVDAGPKG V++FRDN F  P  LV FI ++    K+RP
Sbjct: 1076 EVRYLFKIAAIKAYCRRANVEKVDAGPKGVVITFRDNAFAQPDKLVFFIKRHGDAAKVRP 1135

Query: 1140 DHKLVYRRDWEVARERIQGLGKLMRTLADIADEER 1174
            D K+V+ + WE   ER+ G   +++ LAD+A+  +
Sbjct: 1136 DMKVVFFQVWETPEERLMGTTDILKQLADLAENRK 1170