Pairwise Alignments

Query, 500 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  265 bits (677), Expect = 4e-75
 Identities = 166/524 (31%), Positives = 283/524 (54%), Gaps = 54/524 (10%)

Query: 21  MALIEFDLDGTILAANTNFLTVMGYRLDEVRGKKHSLFVEPAERDSAEYRAFWDQLRRGT 80
           +AL+E + +GTI  A+  F  +     + + G   +      ++ S +        ++G 
Sbjct: 76  LALLECEPNGTICYASDAFAHLCRVSAEAMVGADFANLWRTHQQPSVQ--RLLQDAKKGH 133

Query: 81  FLAREFKRVGKGGKEIWLEASYNPILGLGGKPTGVLKIATDITRKKAEAVELQEKVAAIS 140
            ++ E + + +  + IW++A   PI  + G+   V+ +  DIT  K E ++   ++ A++
Sbjct: 134 PVSAELQ-LSRSQEAIWIKADLYPIKAINGQLQNVVVLLQDITAAKLEKIDRSGQMNAVN 192

Query: 141 RSQAVIEFAMDGTILTANENFLKTMGYRLEDIQGKNHSLFIAPGERDSAEYRQFWDILRR 200
            +QAVIEF +DGTILTAN+NFL+T+GY+L++IQG++HS+F+    + S EY+ FW  LR 
Sbjct: 193 LTQAVIEFTLDGTILTANQNFLQTVGYQLDEIQGRHHSMFVDEQYKQSQEYQHFWQRLRS 252

Query: 201 GEFQARQFMRIGKGGRVVWLEASYNPILNLDGKPYKVVKFATDISGRK------------ 248
           GEF   ++ R GKGG+ +W++ASYNPI++ +GKPYKVVK+AT+++ RK            
Sbjct: 253 GEFFVDEYKRFGKGGKEIWIQASYNPIMDSEGKPYKVVKYATNVTQRKMVVNEVKRVMTA 312

Query: 249 ----EENAALAKQFE---------------------TGVKATVETVASSAGKMQNTAQAM 283
               + +A L   FE                     T + +   T+  +A ++ N    +
Sbjct: 313 LSSGDLSAQLTHPFEGEFAELGEVISQFIVTLRQIITDINSVAATIKLAATEISNGNTDL 372

Query: 284 AAAAEQTSQQSSIVSTAAEELGTSVSEIARQIAQATRVTDDAVAETKASEKLVGELVTAA 343
           ++  EQ +      +++ EEL ++V + +    QA  +   A     +  +L+ ++V   
Sbjct: 373 SSRTEQQASNLEQTASSMEELNSTVRQNSDNAMQANILAGKATEIAASGGELIEQVVVTM 432

Query: 344 DKIGAVSQLIAD-------IASQTNLLALNATIEAARAGDAGKGFAVVASEVKSLANQTA 396
             I   +Q IAD       IA QTN+LALNA +EAARAG+ G+GF+VVASEV+SLA ++A
Sbjct: 433 ASINESAQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFSVVASEVRSLAQRSA 492

Query: 397 KATEEIE----QQVSGIQDSSR---ATASAIRQIGLVIAQVSEISASISGAAEEQAAATR 449
            A ++I+      VS I + +     + S ++ I + I +V ++ A I+ A+ EQA    
Sbjct: 493 NAAKDIKALISDSVSKISNGNELVDRSGSTMKDIVVSIKRVHDLMADIASASAEQATGIN 552

Query: 450 EVSQNINGVEQAAAQTGRSSTELLSVAQSMSHQADDLETRVDAF 493
           EV+Q +N +++   Q      E  + ++S+  QA+ L   V  F
Sbjct: 553 EVNQAVNQMDEMTQQNAALVEEAAAASESLLAQAEQLYDHVAMF 596