Pairwise Alignments

Query, 388 a.a., Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) from Rhodospirillum rubrum S1H

Subject, 391 a.a., penicillin-binding protein 6 (RefSeq) from Shewanella sp. ANA-3

 Score =  275 bits (704), Expect = 1e-78
 Identities = 146/346 (42%), Positives = 221/346 (63%), Gaps = 7/346 (2%)

Query: 30  ARHALVIDLDTDTVLLDKDADVPMPPSSMSKLMTAYMLFERLKSGSLSLDDTFSVSENAW 89
           A+  +++D  +  ++ +++A   + P+S++K+MT+Y++ + +K+G++S DD  ++S+NAW
Sbjct: 38  AKAYVLMDYYSGQIIAEENAYESLNPASLTKMMTSYVIGQEIKAGNVSPDDDVTISKNAW 97

Query: 90  RKGGAASGGSTMFLNPGAQVKVHDLMRGIIIQSGNDACVVVAENLAGDEATFAAAMNRRA 149
            K    S  S MF+  G  VKV DL RGIIIQSGNDACV +AE++AG E  F   MN  A
Sbjct: 98  SKN--FSDSSKMFIEVGKTVKVSDLNRGIIIQSGNDACVAMAEHIAGTEGAFVDMMNSWA 155

Query: 150 KELGLTNSHFVNATGLPDPEHYMTAHDLVLLAEHIIRDFPEFYEIYGETKFTYNGIVQHN 209
           K+LG+ +S+F N+ GL    H  TA+D+ LL   +IRD PE Y +Y E  +T+NGI Q+N
Sbjct: 156 KQLGMRDSYFENSHGLDSENHKSTAYDMALLGAALIRDVPEEYRVYSEKYYTFNGIKQYN 215

Query: 210 RNPLLYMN-MGADGLKTGHTNIAGFGLTASAVQDGRRLLMVINGLQSNKERSEEAERLMS 268
           RN LL+ N M  DG+KTGHT+ AG+ L ASA +DG RL+ V+ G QS   R  E+++L++
Sbjct: 216 RNGLLWDNSMNVDGIKTGHTSGAGYNLVASATKDGMRLISVVMGTQSEAARKAESKKLLT 275

Query: 269 WGFRNFETVTLLKAGQPISDADVWMGEEETVPLVSVNDLKITLPRAARRDMVAKAVFETP 328
           +GFR FETVT  KAG       +W G++ TV L    D  IT+ R   +D+ A      P
Sbjct: 276 YGFRFFETVTPYKAGDSFVTQQIWYGDKSTVDLGVATDTPITISRGRAKDLKANFELTKP 335

Query: 329 IPAPIQAGDRIATLV--LTGPDMAKLEYPLVAGRAVEQLSFFGRIL 372
           + AP++ G+ +  L   L G D+A  ++PLV  + V + S+F +++
Sbjct: 336 LDAPLKKGETVGRLYFQLDGKDIA--QFPLVTLQEVNEGSWFSKLV 379