Pairwise Alignments

Query, 785 a.a., surface antigen D15 (NCBI) from Rhodospirillum rubrum S1H

Subject, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

 Score =  292 bits (747), Expect = 6e-83
 Identities = 221/790 (27%), Positives = 361/790 (45%), Gaps = 67/790 (8%)

Query: 51  IDRIVIEGTQRIDPETVLTYMTVREGDVYDAGKVDRSLKNLFETGLFADVSMRHEGGRLV 110
           +  I I+G QR+     L  M VR GD  D+  V   +K L+ +G F DV +  +G  L+
Sbjct: 26  VQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVANIIKALYSSGNFEDVKVLRDGNTLM 85

Query: 111 VSVAENPIINRIAFEGNRRIKDPQLETEIQ---LRPRVVYTRAKVQEDVQRILELYRRSG 167
           V V E P I  ++F GN+ IK+ QL+  ++   +R      R  +    + + + Y   G
Sbjct: 86  VQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIRVGEALDRTTLSNIEKGLEDFYYSVG 145

Query: 168 RYAVSVEPKVIALDQNRVDLAFEINEGPSTTVRRISFVGNKVYDDSALREVVETSEE-AW 226
           +Y  +V+  V  L +NR DL F   EG S  +++I+F+GN+V+ D  L      + + AW
Sbjct: 146 KYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQINFIGNQVFSDEELLSRFNLNVDVAW 205

Query: 227 YRFLSSTDTYDPDRLTYDRELLRRHYLKNGYADFQVKSAIAELSTDRQAFFMTFTVSEGE 286
           + FL+  D Y    L  D E LR +YL  GY  FQV S    +S D++  ++T  ++EGE
Sbjct: 206 WNFLAD-DKYKKQVLAGDIEALRTYYLDRGYLKFQVDSTQVAISPDKKGVYITLNLNEGE 264

Query: 287 RYRFGPVGLETTLAELDPEALRGVITFKDGDWYSADKVEAAVQKLTDEVGNRGFAFVDVK 346
            Y    V     L   + E    +I F+ G+ Y+   V    + +   +G  G+A+  V+
Sbjct: 265 PYTVSKVQFRGELMGKEAE-FTSLIPFEIGETYNGSAVTRLEESVKKVLGESGYAYPQVR 323

Query: 347 PRVTRDADKRTIAITFQIDEGPRAFVERIDINGNVRTLDEVVRREMMLSEGDAFNSAKLR 406
                D +K+ +++   ++ G R +V  I   GN  T DEV+RREM   EG   NS  + 
Sbjct: 324 TIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNSTRDEVLRREMRQMEGSWLNSKDIE 383

Query: 407 RSRQRIQDLGFFEKVEVNNEPSPTAPDRTVVKVDVTEKSTGEVSFGVGWSSSVGAIIEVG 466
             + R+  LGFFE VEV     P + D+  +   V E ++G V+FGVG+ +  G   +VG
Sbjct: 384 TGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKEANSGNVNFGVGYGTESGVSFQVG 443

Query: 467 LRERNLLGRGQDLKASVSWAQRRSQVDISFTEPYFLDRRLRAGVDLYAIERDLKKESSYD 526
           L++ N LG G  +  +      +  + + + +PY+    +  G  ++  + +  +    D
Sbjct: 444 LQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNLDGVSLGGKVFYNQFEASEAGIVD 503

Query: 527 Y--RTYGTALRLGYNYNE------NLGHTFKYTAEFNEITDVKSDASRFIKNQDDKTYLS 578
           Y   +YGT+L  G+ ++E       +G+T            V++  +    N D      
Sbjct: 504 YTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLTPYLQVENFLAAQASNIDSG---- 559

Query: 579 MIGHVLTYD----RRDSKLDPKDGYVLSLGN------DMAGLGGSEYFLRSDAKAAYYAP 628
             G++LT D       ++ +  + Y  + GN       M   G    + +       Y P
Sbjct: 560 --GNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTVPGSDAQYFKLQYDVRQYFP 617

Query: 629 IGDWFDWNPTWGLTVKGGAGYMFGLGK-DVNIN-----QRYNLGG-TNLRGFANAGASPR 681
           +    ++     L ++G  GY  G G+ D   N     + +  GG T+LRGF +  A P+
Sbjct: 618 LTKKHEFT----LLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGFTSLRGFGSNSAGPK 673

Query: 682 -------------DADTDDALGGNWVTTGSVEVAVPLGLPAELG---LSGRLFSDFGMI- 724
                        D  TDD++GGN +   SVE+ VP    +E     +   +F D   + 
Sbjct: 674 AVYRDYSGSNNGSDTATDDSVGGNAIALASVELIVPTPFASEEARNQIRTSIFYDMASVW 733

Query: 725 -------GKPDDFDEALMD--GAVSPRLSAGAGVTWVSPVGPISVDLGYPLVKEKFDKTE 775
                  GK D  ++   D     + R S G  + WVSP+GP+   L  P+ K + D  E
Sbjct: 734 DTEFDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWVSPMGPLVFSLAKPIKKYEGDDEE 793

Query: 776 VFRLSFGSRF 785
            F  + G  F
Sbjct: 794 FFTFTIGRTF 803