Pairwise Alignments

Query, 583 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 548 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  165 bits (418), Expect = 4e-45
 Identities = 149/578 (25%), Positives = 256/578 (44%), Gaps = 106/578 (18%)

Query: 28  MLRNKRVVVKISVIVAIMGLALCVTVGWLLKSQYDALLDERVTQTRVLTEAAVGVATKLQ 87
           + R  ++  ++  ++ +  +A  +   + L +  + L+ E+  +   L++    V ++  
Sbjct: 7   LFRKFKIAHRLLFMLLLAIVATGIMFVFALANIEEVLVKEKQAKLSALSDVGEKVISQFY 66

Query: 88  AEVSAGRLTRDQAIETWKTALNGMTYGDNGYLFAYAVDGINLVLPPRPDLVGKPVVDRG- 146
               AG ++ ++A      AL+ + Y  N Y +     GI +       LVG  V+    
Sbjct: 67  EASQAGSMSEEEAKRNAIAALDALRYEGNEYFWTIDRQGIMVQHAFAKKLVGTNVLGMKD 126

Query: 147 ----AFLALQAAATRGPGGGRLDYVWPRVKGGPPIPKVSWAMEIKAWGALVGTGIFVDDV 202
                        T       ++Y+W R     P PK+S       WG +VGTGI+VDD+
Sbjct: 127 PNGVRLFEKMVTGTANSDYALIEYMWNRPNASAPSPKMSVVKRFTPWGWIVGTGIYVDDI 186

Query: 203 QAIFWAKLREAMLIGGLLSAVAIVLVSLISRDLSAVLGDIAQRMALISGGQVDIAVPNQD 262
           Q    A + + +LI   +    I+++ +ISR +SA + D       I+ G+ D+ +    
Sbjct: 187 QEEMQAFIYKYLLICIAVWLPVILILGVISRSISAPMADTIAAFENIARGEGDLTL---- 242

Query: 263 RRDEAGAMARSLEVFRGKVAETEHLRGDQERLKASAEAARKASLVELAKRFEDSVNSVAQ 322
           R +E+G                      ++ LK  A     AS  E   + +  VNSV+ 
Sbjct: 243 RLEESG----------------------RDELKQVA-----ASFNEFVAKIQALVNSVSA 275

Query: 323 AVAKGARTMDENARTMFGLANVTREKASDSSVMSERTNANFQTVASASEQLSASIREIAN 382
           +V       +       GLA++    ++ +S+++    A  Q+VA+A  ++S +  E+A+
Sbjct: 276 SVTHSRELAE-------GLADI----SAQASMVTANMQAETQSVATAINEMSMASSEVAS 324

Query: 383 QTDKARVTSQQAVETADQ---------------------SADRMAGLVSDAEKIGAVITL 421
               A  ++  A   AD                      +AD    L   + KIG ++ +
Sbjct: 325 NAQLAADSAGSADGEADDTVAVVDGAVAKIKGLSNELEVTADEAQALQISSGKIGQILDV 384

Query: 422 IEAIASQTNLLALNATIEAARAGDAGKGFAVVAHEVKNLSTQTRKATEDIRGQIERVRAS 481
           I  IA QTNLLALNA IEAARAG+AG+GFAVVA EV+ L+++T+++T++I   IE +RAS
Sbjct: 385 IVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRTLASRTQESTQEINAIIEAIRAS 444

Query: 482 VSAAASDIA---------------------TISHVIHDIAEAAGAISAAVEEQGAATKEI 520
           V +  + +A                     TI   I  I++    I+ A EEQ A   E+
Sbjct: 445 VDSVNASVARAKAQSEQTVGETSQVVEALQTIKSSIRQISDMNIQIATATEEQSAVIAEL 504

Query: 521 SRSV--------------QEVLSTSESV---SHDIRTL 541
           + +V              +E+ STSE +   S D+ +L
Sbjct: 505 NMNVTRINDISLENQQKSEEIGSTSEQIKSGSADLESL 542



 Score = 41.6 bits (96), Expect = 8e-08
 Identities = 47/256 (18%), Positives = 102/256 (39%), Gaps = 16/256 (6%)

Query: 229 SLISRDLSAVLGDIAQRMALISGGQVDIAVPNQDRRDEAGAMARSLE----VFRGKVAET 284
           S+++ ++ A    +A  +  +S    ++A   Q   D AG+     +    V  G VA+ 
Sbjct: 295 SMVTANMQAETQSVATAINEMSMASSEVASNAQLAADSAGSADGEADDTVAVVDGAVAKI 354

Query: 285 EHLRGDQERLKASAEAARKAS-----LVELAKRFEDSVNSVAQAVAKGARTMDENARTMF 339
           + L  + E     A+A + +S     ++++     +  N +A   A  A    E  R   
Sbjct: 355 KGLSNELEVTADEAQALQISSGKIGQILDVIVGIAEQTNLLALNAAIEAARAGEAGRGFA 414

Query: 340 GLANVTREKASDSSVMSERTNANFQTVASASEQLSASIREIANQTDKARVTSQQAVETAD 399
            +A+  R  AS +   ++  NA  + + ++ + ++AS+        +A+  S+Q V    
Sbjct: 415 VVADEVRTLASRTQESTQEINAIIEAIRASVDSVNASVA-------RAKAQSEQTVGETS 467

Query: 400 QSADRMAGLVSDAEKIGAVITLIEAIASQTNLLALNATIEAARAGDAGKGFAVVAHEVKN 459
           Q  + +  + S   +I  +   I     + + +     +   R  D        + E+ +
Sbjct: 468 QVVEALQTIKSSIRQISDMNIQIATATEEQSAVIAELNMNVTRINDISLENQQKSEEIGS 527

Query: 460 LSTQTRKATEDIRGQI 475
            S Q +  + D+   I
Sbjct: 528 TSEQIKSGSADLESLI 543



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 22/118 (18%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 464 TRKATEDIRGQIERVRASVSAAASDIATISHVIHDIAEAAGAISAAVEEQGAATKEISRS 523
           T +  E  R ++++V AS +   + I  + + +      +  ++  + +  A    ++ +
Sbjct: 241 TLRLEESGRDELKQVAASFNEFVAKIQALVNSVSASVTHSRELAEGLADISAQASMVTAN 300

Query: 524 VQEVLSTSESVSHDIRTLAEAARETETTAGALRDTAGGLGQAATTLQEKVDGFLGDLR 581
           +Q   + ++SV+  I  ++ A+ E  + A    D+AG     A      VDG +  ++
Sbjct: 301 MQ---AETQSVATAINEMSMASSEVASNAQLAADSAGSADGEADDTVAVVDGAVAKIK 355