Pairwise Alignments

Query, 510 a.a., Proton-translocating NADH-quinone oxidoreductase, chain M (NCBI) from Rhodospirillum rubrum S1H

Subject, 500 a.a., NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) from Xanthomonas campestris pv. campestris strain 8004

 Score =  493 bits (1269), Expect = e-144
 Identities = 247/499 (49%), Positives = 339/499 (67%), Gaps = 18/499 (3%)

Query: 5   PLLSIITFLPLVGAVFILTVKGEEAVVARNARNVALLTTGFTFLVSLGLWFGFDPAQSGF 64
           PLLS++ +LP++G   IL ++  E      AR  +L     TF++SL L  G+D A    
Sbjct: 5   PLLSLLIWLPIIGGALILALRNAET-----ARWASLAVAVATFVLSLPL-LGYDTANDAM 58

Query: 65  QFVEKVSWLPDYGINYQMGVDGISVLFVLLSTFLTPLCILASWTSITKRVKEYMVAFLVL 124
           QF+E+ +W+P Y I Y +GVDGI+V  ++L+T +T L ++ +W SI KRV +Y+ AFL+L
Sbjct: 59  QFIEQHAWIPAYNIGYNLGVDGIAVALIVLTTLVTVLALIGAWRSIDKRVNQYVAAFLIL 118

Query: 125 ETMMVGMFCALDFVVFYVFFEGVLIPMFLIIGIWGGGRRVYASFKFFLYTLAGSVLMMVA 184
           E + VG+F A D ++FYVFFE +LIPMFLIIG+WGG RR+YA+ KFFLYT  GSVLM+V 
Sbjct: 119 EGVTVGIFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAMKFFLYTFLGSVLMLVG 178

Query: 185 MLAMYIEAGTTDIPTLMSHGFPAAMQTWLWLAMFASFAVKVPMWPVHTWLPDAHVEAPTA 244
           ++ +Y++ G+  +  L +    A  QTW++ A   +FAVKVPM+PVHTWLPDAHVEAPTA
Sbjct: 179 LIYLYLKGGSFQLADLYALQLTAKEQTWIFFAFMIAFAVKVPMFPVHTWLPDAHVEAPTA 238

Query: 245 GSVILAGVLLKMGAYGFLRFSIPMLPLASADFAPFIFALSVIGVIYTSLVALVQEDMKKL 304
           GSVILA + LK+G YGFLRF++P+LP AS  +A  + ALS+I VIY  LVALVQ+DMKKL
Sbjct: 239 GSVILAAIALKIGGYGFLRFNLPILPDASNQWAWLVIALSLIAVIYVGLVALVQDDMKKL 298

Query: 305 IAYSSIAHMAFVTAGIFA------------VNQMSVEGALYQMLSHGVVSGALFLCVGVV 352
           +AYSSIAHM FVT G F               ++ ++GA+ QM+SHG VSGA+F C+GV+
Sbjct: 299 VAYSSIAHMGFVTLGTFIAFTLVREYGSTDAARLGLQGAMVQMISHGFVSGAMFSCIGVL 358

Query: 353 YDRLHTREISRYGGLAKNMPRYALVFMVFMMASIGLPGTGGFIGEFLIMMGVFQISTWVA 412
           YDR+HTR I+ YGG+   MP +A   M+F MA+ GLPGT GF+GEF++++  FQ    VA
Sbjct: 359 YDRMHTRRIADYGGVVNVMPWFATFAMLFFMANAGLPGTSGFVGEFMVILASFQKHPLVA 418

Query: 413 LFIATGVILGAAYMLYLYRRVIFGKLEKEDLKGLLDLNRREVAIFAPLLVLVLWMGVYPS 472
              AT +++ AAY L+LY+RV FG++    +  L D+N RE  +       VL +G+YP 
Sbjct: 419 FAAATTLVITAAYTLWLYKRVFFGEVANAHVAELKDINGREAFVLGVFAAGVLALGLYPK 478

Query: 473 TFLDFMHTSVADLVSTYET 491
              D M  S+A L +   T
Sbjct: 479 PLTDLMEPSIAKLATQIAT 497