Pairwise Alignments

Query, 162 a.a., NADH-quinone oxidoreductase, chain I (NCBI) from Rhodospirillum rubrum S1H

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 49.7 bits (117), Expect = 6e-11
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 15/86 (17%)

Query: 56  YANGEERCIACKLCEAICPA-QAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPV 114
           Y   EE+CI C++C   C   +AI I        S+ T    I+   C+ CG C+ ACPV
Sbjct: 276 YIVDEEKCIGCRICYRSCNVPEAILI--------SKETNLPYINPEYCVRCGLCQNACPV 327

Query: 115 DAIVEGPNFEFAAETREELLYNKAKL 140
           DAI      ++      E LY+K K+
Sbjct: 328 DAI------DYLKTETSEDLYSKRKI 347



 Score = 47.4 bits (111), Expect = 3e-10
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 61  ERCIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAIVEG 120
           E+CI+C  C+  CP+ AI++E                D   CI CG C E+CP + +  G
Sbjct: 47  EKCISCSACKESCPSDAISMEFNEEFKKEMPV----FDAGSCINCGNCVESCPTNVLEMG 102

Query: 121 PNFEFAAETREELLYNKAKLL 141
                  +  +ELL+N  K++
Sbjct: 103 T----LRKEAKELLWNVPKII 119



 Score = 47.0 bits (110), Expect = 4e-10
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 12/84 (14%)

Query: 60  EERCIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVD-AIV 118
           EE C++C  CE  CP  AI+            T  Y+ID+  C+ C  C +ACPV+ AIV
Sbjct: 125 EEVCVSCGTCENACPVDAIS---------HNNTGLYEIDVNLCVSCKNCLKACPVENAIV 175

Query: 119 --EGPNFEFAAETREELLYNKAKL 140
               P      E  + + +++ +L
Sbjct: 176 TYSEPELSEKIEIAQNIKFDRERL 199



 Score = 40.8 bits (94), Expect = 3e-08
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 63  CIACKLCEAICPAQAITI-----EAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAI 117
           CI C  C   CP   + +     EA+       +     ID   C+ CG CE ACPVDAI
Sbjct: 84  CINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACPVDAI 143



 Score = 32.7 bits (73), Expect = 7e-06
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 15/79 (18%)

Query: 63  CIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAIVEGPN 122
           CI C  C  +CP  +I +E               + +T CI  G C E CP  AI  G  
Sbjct: 221 CIGCGNCVDVCPG-SIDLER--------------LKVTSCIKSGKCLEVCPTTAIRIGVP 265

Query: 123 FEFAAETREELLYNKAKLL 141
            +    T E  + ++ K +
Sbjct: 266 EKITKRTAECYIVDEEKCI 284