Pairwise Alignments

Query, 392 a.a., NADH dehydrogenase I, D subunit (NCBI) from Rhodospirillum rubrum S1H

Subject, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

 Score =  126 bits (316), Expect = 1e-33
 Identities = 98/375 (26%), Positives = 173/375 (46%), Gaps = 35/375 (9%)

Query: 14  GPQHPAAHGVLRLVLELSGEVIERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYACP 73
           GP HP     LR+ L + GE ++ A+  +G +HRG E+++E K YL+ +   +R+   C 
Sbjct: 7   GPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVCGICS 66

Query: 74  MNQEHAYVLAVEKLLGITVPPRAQYLRTLFNEVTRLINHIMNTTSMALDIGAMTPLLYGF 133
                ++   +E +  I VP +A+YLR +  E+ R+ +H++      L I   T  ++  
Sbjct: 67  YIHTQSFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETLGIWML 126

Query: 134 EEREHLLEFSERASGARMHAAWFRPGGVARDVPPDLLEDILKFCDSFPKYLDDVEHLLDE 193
             RE +++  E  +G R++  +   GGV  D+  ++L+ I K  D F + + ++  + + 
Sbjct: 127 NVRESIMDLLELITGNRVNMGFNVVGGVRLDLNKEILDKIHKKIDEFEEDVKNIIEVFET 186

Query: 194 NRIFKQRTVDIGKVTAQQALDWGFTGPVLRGCGVP---WDLRKSQPYDAYAAMDFDIPTG 250
             +   R+  IGK+  ++ +     GPV R  G+P   W +R    ++ Y A++F     
Sbjct: 187 GPLIGMRSKHIGKIGYKEIMKTRAAGPVARASGIPESDWRIR----HETYKALNFKPDWR 242

Query: 251 ANGDCYDRYLVRMAEQRQSIRIMRQCIEKMPDGPVKAVDHKVTPPSRGEMKSSMEALIHH 310
             GD Y R +VR  E   S+ ++R+ +E   +             S G +++  E     
Sbjct: 243 NEGDNYARMMVRHDEVLTSVELIRRALEHYAE-------------SSGIVRNKAE----- 284

Query: 311 FKLFTEGFKVPEGETYTAVEAATGEFGVYLVSDGTNRPYRCKIRSPGYVHLQGLDLMSRG 370
                   +  EGE Y   EA  GE    +         R  IR+P  ++L+    M + 
Sbjct: 285 -------IRATEGEWYN--EAHRGEVYYKIAITDGGLIKRIIIRTPTVMNLEAYKYMIKD 335

Query: 371 -HMLADVVANIGSID 384
              +AD VA   SID
Sbjct: 336 CPTIADAVATYTSID 350