Pairwise Alignments

Query, 527 a.a., Cl- channel, voltage gated (NCBI) from Rhodospirillum rubrum S1H

Subject, 615 a.a., chloride channel-like from Synechococcus elongatus PCC 7942

 Score =  207 bits (527), Expect = 9e-58
 Identities = 152/435 (34%), Positives = 235/435 (54%), Gaps = 44/435 (10%)

Query: 12  LRRLLRTQSLVLGALAVGIGLLVGAGTVAFREAIDLVQTLFYGGDDLYLARLARSLPGW- 70
           L RL   +S +L  LA G+GL  GA  V F     L ++L  G      + L+ +L  W 
Sbjct: 23  LVRLFSPESYLL-LLAAGVGLSTGAAIVGFHL---LYESLHQG----VFSWLSSTLSAWG 74

Query: 71  ---LVVLGPTAGGLLVG---LYYAKVMPGGKPQGVAQVIGAVARTGGR--MRAGDGVLAA 122
               + L P  GGL++G   L + +  P      +  +IG    TGG   +R    + AA
Sbjct: 75  GHQTLALIPLLGGLVMGGLILIWPRFGPS-----MTGLIGLARGTGGDEPLRTPQKLFAA 129

Query: 123 CGSALSLGCGASVGREGPAVHLGAALAAGLAGRLRLGPGLARTVLGCGVAAAVAASFNAP 182
              +LSL  GAS+G EGP+V  G  L   +A   ++       ++G G AA +AA FNAP
Sbjct: 130 ---SLSLASGASLGPEGPSVESGGNLGLAIARWAKMSRERQLLLIGAGAAAGIAAGFNAP 186

Query: 183 IAGALFAGEVVIG-HYALSAFAPIVVSSVVATVLSRGWFGDFPAFILPHLTLASAWEFPA 241
           IAG  FA EVV+G  +A +A + +++++V++ ++++   G  PAF LP   + S  E P 
Sbjct: 187 IAGVFFAFEVVLGTSFAGAAVSAVLIAAVLSALVAQVGLGAQPAFSLPDYVVRSPLELPL 246

Query: 242 FVVLGGLCGLVAVAFM----------RGVFLAGGLASALRLPVVLRPMVAGALVGLLALV 291
           ++ LG L  LV+ ++M          RG    G +    R+P  LRP +AG +VGL+AL 
Sbjct: 247 YLGLGVLASLVSSSYMALVQVLQQAFRGETAIGAVLG--RIPRSLRPALAGLIVGLVALQ 304

Query: 292 LPEVLGVGYEATDQVLKGAYHLDLLLPLIL-AKLAASVICLGFGFGGGVFSPSLTLGALV 350
            P+VLGVGYE  + +L G     L L L+L  KL  + +CL  GF GG F+P++ LGA++
Sbjct: 305 FPQVLGVGYETIEGLLSGMSLTPLTLVLLLIGKLGLTALCLASGFVGGGFAPAMFLGAVL 364

Query: 351 GGAFGLAIALV-----APVSASGAYALIGMGALSAAVLGAPISTTLIVFELTGDYALSVG 405
           G  +G  +         P+++  AYA++GM A+ A  + AP++  L++FELT DY + + 
Sbjct: 365 GSFYGWVLTAFFPTSWIPIASPPAYAMVGMAAVLAGSVRAPLTAILLLFELTRDYRIVLP 424

Query: 406 TMVAAVVAGALSRQI 420
            M AA ++  L+ ++
Sbjct: 425 LMAAAGLSAWLADRL 439