Pairwise Alignments

Query, 1483 a.a., Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity (NCBI) from Rhodospirillum rubrum S1H

Subject, 1188 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  176 bits (445), Expect = 2e-47
 Identities = 154/570 (27%), Positives = 272/570 (47%), Gaps = 36/570 (6%)

Query: 847  TQDNGVEGVVITFADITERRWAADAREVAKRQAQIANMAKSRFLAVASHDLRQPLQTLTL 906
            T D   + +V T  DIT  +    A   AK+ A++AN+ KS FLA  SH++R P+  +  
Sbjct: 635  TTDGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIG 694

Query: 907  LQGLLAKKVEGVQSRVLLARMDETLGAMSSMLNVLLDINQIEVGTVEAERVVFPINDLFD 966
            +  L  +     Q +  L +   +  ++  ++N +LD ++IE G +E ERV FP++ + D
Sbjct: 695  MLQLAQRTSLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLD 754

Query: 967  RVREELAYQARAKKLD---WSVVSCGLSVTSDPRLLEQMIRNLLANALKYTKQGKVLLGC 1023
               +  A +A+ + ++   ++ V+ GL +  DP  L Q++ NLL+NA+K+T+ G++ LGC
Sbjct: 755  HALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGC 814

Query: 1024 R---RRSGSLSIEVW--DSGIGIPPGELEAIFDEFHQVETPAQGQGRGLGLGLSIVRRLG 1078
                 R   ++++ W  D+GIGI   + E +FD F Q +     +  G GLGLSI + L 
Sbjct: 815  EDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLV 874

Query: 1079 DLLGHPIGVRSRLGKGSV--FTINVAIAPAAAEKPSLPARRGAAEVKVDADGQRTGEILI 1136
             ++G  + V+S LG GS   FTI+  IA  A  +P +        V    +  RT   L+
Sbjct: 875  SMMGGKMQVQSELGVGSTFSFTISFEIAEEAKIEPLV--------VPEKLNNLRT---LV 923

Query: 1137 IEDDPDVRDLLDLLLKGEGHRTVAVAEGGQAVALAEGGSIRPDLILADYNLP-----NGV 1191
            ++D+P    +   L++         A G +A+       I  DL+L D+ +P     + +
Sbjct: 924  VDDNPTALQIYSALMRDFHFEVDTAASGAEALYKLSRDPI--DLLLLDWMMPEMDGSDVI 981

Query: 1192 NGLGVSATLRDVLDRPIPVVILTGDISTRTLHDI-ARHRCVKLNKPVKPGEL-TQTIARL 1249
            + +        +  RPI ++++T   +   LH++ + +    L KP K   L  + IA  
Sbjct: 982  SAIDTMVAEGRIAKRPI-IIMMTAYAAEPLLHEVDSANVFAVLQKPFKASSLFDEIIAAF 1040

Query: 1250 LPPPVGPAAARLPAPPPSPGPGGPLPLIYLVDDDASLRDSLRALLEDDGLKVEDYESSEA 1309
               P        P    +   G    L+ LV+D+   +     LL+  G +V    + + 
Sbjct: 1041 ADEP--RLNVVQPIAEVAVEEGEHTGLVLLVEDNFINQQVATELLKSAGYEVVVAGNGQI 1098

Query: 1310 FLAAYRPGGGEACLLIDAYLPGMSGLDLLERLKKENR--LLPAIVITGYSEVAMAVQAMK 1367
             L        +A +L+D  +P M GL     L++     +LP I +T ++      +++ 
Sbjct: 1099 ALDIVDSRPFDA-VLMDIQMPVMDGLTAARALRERYSADVLPIIAMTAHAMSGDREKSLA 1157

Query: 1368 AGASDFIEKPVGRTELLISIDRALEQHREH 1397
            AG +  I KP+  TEL  ++   ++    H
Sbjct: 1158 AGMNAHITKPIVLTELFETLTHWIKHKHNH 1187



 Score = 30.8 bits (68), Expect = 9e-04
 Identities = 34/177 (19%), Positives = 77/177 (43%), Gaps = 4/177 (2%)

Query: 710 LSVSEEYQATNEELLASKEELQSLNEELTALNGQLHETLERQRTTSNDLQNVLYSTDVAT 769
           L VS  ++   +      E+ + L++ +     +L +  ER+      L+++L S   A 
Sbjct: 364 LLVSRIFEENKQYTHHLAEQNKRLDKLVARRTERLKDATERREREYALLRSLLDSIPEAI 423

Query: 770 LFLDTALNIRFFTPATKLLFRVIPGD-IGRPLADLSPLVADDALLGDAAKVLKTMTPI-- 826
           +F D   N      A + +      + IG    DL+       +  + A++LK  TP+  
Sbjct: 424 VFKDKEGNYLGCNKAAERMLGYTESEMIGLSSEDLTSPEMGIRIRAEDAQILKDRTPLRY 483

Query: 827 EREIEARSGSWYLRRI-LPYRTQDNGVEGVVITFADITERRWAADAREVAKRQAQIA 882
           + ++E       L  + LP+  +   ++G++  + D+T    +A+   +++ +  +A
Sbjct: 484 QEKVELAGKPVLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLA 540