Pairwise Alignments

Query, 361 a.a., NADH dehydrogenase (ubiquinone) (NCBI) from Rhodospirillum rubrum S1H

Subject, 568 a.a., nickel-dependent hydrogenase, large subunit (RefSeq) from Shewanella loihica PV-4

 Score = 47.8 bits (112), Expect = 7e-10
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 15  LEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTERVCSLCSNSHPQT 74
           +E  +   +EVD   VV    ++  + RGIE +   R      ++ +R+C +C+ SH + 
Sbjct: 13  IEGHLRIEVEVDENNVVQKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICGVCTYSHYRC 72

Query: 75  YCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFD 121
              A+E+  G+ +P  A+YLR +   +  +  H+ +     H+ G D
Sbjct: 73  GTEAVENALGVKIPLNAKYLRSLMQTSLYMHDHIVH---FYHLHGLD 116



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 18/80 (22%)

Query: 296 AKTEAPRGELIYYLKT-NGTDRPERLKWRVPTYMNWDALNVM---------MAGARISD- 344
           A  EAPRG L ++++  NG    E  +  VPT  N   ++           + G ++ D 
Sbjct: 469 AMIEAPRGMLSHWIRIKNGL--VENYQAVVPTTWNAGPVDAAGKVGPYEASLLGLKLEDP 526

Query: 345 -----IPLIVNSIDPCISCT 359
                +  I++S DPC++C+
Sbjct: 527 TKPLEVIRIIHSFDPCMACS 546