Pairwise Alignments

Query, 361 a.a., NADH dehydrogenase (ubiquinone) (NCBI) from Rhodospirillum rubrum S1H

Subject, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

 Score =  170 bits (430), Expect = 6e-47
 Identities = 106/361 (29%), Positives = 178/361 (49%), Gaps = 6/361 (1%)

Query: 6   IPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTERVCS 65
           I +GP+H  + EP   R+ ++ E V   ++T G  HRG+E L     + +  +L E++C 
Sbjct: 6   IAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICG 65

Query: 66  LCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFDSLFM 125
           +CS+ H  +    +E    + +P RA ++R+I +E +R+ SH         I+G +++ M
Sbjct: 66  ICSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSM 125

Query: 126 HVMEAREIMQDTKEAVFGNRMDIAAMAIGGV--KYDLDKDGRDYFIGQLDKLEPTLRDEI 183
                RE +      + G+R+  +   IGG+  + ++ +    + + ++ K E  L ++ 
Sbjct: 126 RCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISETQIPHILDKISKYEEGL-NKF 184

Query: 184 IPLYQTNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRLDFEM 243
           +     +P I+ R + +GV+       +  +GP ARGS    D+RK      YD  DF+ 
Sbjct: 185 LERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFDE 244

Query: 244 ALGEHGDVWSRAMVRWQEALTSIGLIRQCLRDMPDGPTKAGPVPPIPAGE---AVAKTEA 300
            L + GDV++R  VR+ E L S+ +IRQ L  + D   K    P     E       TEA
Sbjct: 245 ILFDSGDVFARLAVRFYECLESVKIIRQALDALKDTSDKRIYNPNYELHEFKPINCYTEA 304

Query: 301 PRGELIYYLKTNGTDRPERLKWRVPTYMNWDALNVMMAGARISDIPLIVNSIDPCISCTE 360
            RGE  Y    +      + K R PT  N  A+  ++ G  +SD  LI+ S DPC +CT+
Sbjct: 305 QRGEQYYSYGLDDEGLVRQAKIRTPTATNLGAMEDIVKGYHVSDAELIIASCDPCFTCTD 364

Query: 361 R 361
           R
Sbjct: 365 R 365