Pairwise Alignments

Query, 559 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  192 bits (488), Expect = 3e-53
 Identities = 147/568 (25%), Positives = 270/568 (47%), Gaps = 47/568 (8%)

Query: 3   RTYGISLKLMSTAILTVVGFTIVAGMALYQLRTTMIADRVDKLTNLTEIAEGVVKSFYNR 62
           R   I  +L    ++ +V   I   + +   R  ++ ++  +  +L E A  +++ +  +
Sbjct: 17  RHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYAQQ 76

Query: 63  AQSGELDEATAKKQALNALREARYAGNEYFSIFDQNGLCLMHAARPEREGRVLLEDKDAN 122
           A  G L    A+  A  A+ + RY  N+YF I D     +MH  +P+  G+ L   KD N
Sbjct: 77  ATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFKDPN 136

Query: 123 GVQIVKELVKVAAVG-GGIVSYKFPHVGETTPVPKMSYGNDFKPWNWVLVTGIFIDDVDH 181
           G  +  E+V V      G+V Y++P  G   PV K+SY   FKPW W++ TGI++DDV+ 
Sbjct: 137 GKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIGTGIYVDDVNA 196

Query: 182 -AFYSIAARFALVLGVVMIAAVGLVIALSRNIGGGVIRLVKVTERLAARDFSVEIPATDR 240
                +++    V+G +++  V L   + R+I       +   + +A  +  +    T  
Sbjct: 197 LVMQRLSSILVWVVGTLLVLIV-LASLIGRSITQPCEETLATLKNIAQGEGDLTRQLTVT 255

Query: 241 G-DEIGQLAKAVAVLRDGAREADHLRQRQDGLKAEAEAERRRAMLSVADGFEGSVKRVAD 299
           G DE+ Q+A+A  +  +  R   H+ Q                           +  + +
Sbjct: 256 GKDELAQIAQAFNLFTNKIR---HIIQ--------------------------EITPITE 286

Query: 300 TIAGAANQLEDAAKAVSGAVDTASHQATSIAAAAEQASAN---VATVASAAEELTSSIQE 356
           ++ G+A++L   A++ S           ++A+A  Q  A+   VA  A  AE+   S  +
Sbjct: 287 SVTGSADELTQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQ 346

Query: 357 ISRQVHQSSTISTNAVKEAQN----TNELVMGLAATATRIGDVVKLINDIASQTNLLALN 412
            + Q  +  T+++  ++  ++    T +    LA+    +  V+++I  +A QTNLLALN
Sbjct: 347 AASQGREMITLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALN 406

Query: 413 ATIEAARAGDAGKGFAVVANEVKSLANQTAKATDDISNQIGAVQ---SATGQAVDAIRGI 469
           A IEAARAG+ G+GFAVVA+EV++LA +T  +T++I   I  +Q    +  Q++   +  
Sbjct: 407 AAIEAARAGEQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQ 466

Query: 470 TGTIAQISEIGETIAAAVEEQGAATLEIARNVQQAAA----GTQEVTSTLSQLSAVTAQA 525
           +    Q +E  + +   +E Q    L   +++  A+A     T E+T  L+Q++  + QA
Sbjct: 467 SRVTQQQAEQAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQA 526

Query: 526 GSSAGGMLSDCEAMVAEAKTLRGEVAGF 553
            + A  + +  E ++   + L   +A F
Sbjct: 527 SAQANQVAAASEQLMENGQHLARSLAVF 554