Pairwise Alignments

Query, 559 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  199 bits (507), Expect = 2e-55
 Identities = 156/544 (28%), Positives = 243/544 (44%), Gaps = 76/544 (13%)

Query: 30  LYQLRTTMIADRVDKLTNLTEIAEGVVKSFYNRAQSGELDEATAKKQALNALREARYAGN 89
           L   RT +I  +  +L     +    VK  Y   ++GE      + QA   L+  R+  +
Sbjct: 47  LENYRTDLIDAKKKELQAYLMMGVTAVKPLYESDKAGE-----NQAQAKQILKAMRFDSD 101

Query: 90  EYFSIFDQNGLCLMHAARPEREGRVLLEDKDANGVQIVKELVKVAAVGGGIVSYKFPHVG 149
            YF  +D  G+  +HA +PE EG+ L   KD NGV ++  L+  +  G G + + +    
Sbjct: 102 GYFFAYDSQGVNTLHAIKPELEGKNLYGMKDENGVAVIAGLIDASKTGDGFLYFSWHKPT 161

Query: 150 ETTPVPKMSYGNDFKPWNWVLVTGIFIDDVDHAFYSIAARFALVLGVVMIAAVGL----- 204
                PK+ Y      W+WVL TGI+IDDVD       A+    L   MI+A+GL     
Sbjct: 162 INAQAPKLGYAEYLPKWDWVLGTGIYIDDVDTQVAEFRAQREADLYDQMISAIGLSVVGL 221

Query: 205 ---VIALSRNIGGGVIRLVKVTERLAA-----RDFSVEIPATDRGDEIGQLAKAVAVLRD 256
              +IA+S  +  G+  L  V   L A      D +  I    + DEIG +AKA     D
Sbjct: 222 VFTIIAVSVLVSRGIAPLQHVVSSLQAVAAGGGDLTARIKVESQ-DEIGDVAKAFNAFMD 280

Query: 257 GAREADHLRQRQDGLKAEAEAERRRAMLSVADGFEGSVKRVADTIAGAANQLEDAAKAVS 316
                                 +   +++        ++  A+T+  AA +L+      S
Sbjct: 281 ----------------------KLHPLMT-------DIRASANTVEAAAQELDQQTSQAS 311

Query: 317 GAVDTASHQATSIAAAAEQASANVATVAS-------AAEELTSSIQEISRQVHQSSTIST 369
             +D    +   + AA  + SA    VAS       A E   S I    ++V+ +     
Sbjct: 312 HKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLAIDGIG 371

Query: 370 NAVKEAQNTNELVMGLAATATRIGDVVKLINDIASQTNLLALNATIEAARAGDAGKGFAV 429
             V E   T+  V  L+  A +I  V+K+I DIA QTNLLALNA IEAARAG+ G+GFAV
Sbjct: 372 ELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAV 431

Query: 430 VANEVKSLANQTAKATDDISNQIGAVQSATGQAV---------------------DAIRG 468
           VA+EV+SLA++T  +T +I   + A+     +AV                     +++ G
Sbjct: 432 VADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKESLAG 491

Query: 469 ITGTIAQISEIGETIAAAVEEQGAATLEIARNVQQAAAGTQEVTSTLSQLSAVTAQAGSS 528
           I+  ++ I ++G   A+A E+Q A   +I +N+        E++ +  Q  +V+A    S
Sbjct: 492 ISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSHS 551

Query: 529 AGGM 532
              M
Sbjct: 552 GQQM 555



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 21/171 (12%)

Query: 395 VVKLINDIASQTNLLALNATIEAA-RAGDAGKGFAVVANEVKSLANQTAKATDDISNQIG 453
           VV  +  +A+    L     +E+    GD  K F    +++  L      + + +     
Sbjct: 242 VVSSLQAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVE---A 298

Query: 454 AVQSATGQAVDAIRGITGTIAQISEIGETIAAAVEEQGAATLEIARNV-----------Q 502
           A Q    Q   A   + G   +  ++     AAV E  A   E+A N             
Sbjct: 299 AAQELDQQTSQASHKMDGHCLETDKV----VAAVTEMSATAREVASNTYSTAQAIESANS 354

Query: 503 QAAAGTQEVTSTLSQLSAVTAQAG--SSAGGMLSDCEAMVAEAKTLRGEVA 551
           Q A   +EV   +  +  +  +    S+A G LS   A + +   + G++A
Sbjct: 355 QIAVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIA 405