Pairwise Alignments

Query, 371 a.a., Protein of unknown function DUF48 (NCBI) from Rhodospirillum rubrum S1H

Subject, 325 a.a., type I-D CRISPR-associated endonuclease Cas1d from Synechocystis sp000284455 PCC 6803

 Score =  152 bits (385), Expect = 9e-42
 Identities = 110/348 (31%), Positives = 165/348 (47%), Gaps = 29/348 (8%)

Query: 17  MTTLYVTQPGSVVRSEGGSLTVWVETEADDPGPNDSPVRRKRLASVEPHRLESLVLLGFT 76
           M+TLY+TQP +V+  +  +  V ++ E       D   +++ + +     LE +VLLG+ 
Sbjct: 1   MSTLYLTQPDAVLSKKHEAFHVALKQE-------DGSWKKQPIPA---QTLEDIVLLGYP 50

Query: 77  TITANAMRLCMANKIAVSLLDGGGGLAARVVPPEARSADLRLHQYALHLDPPERLIRARA 136
           +IT  A+   +   + V  L   G      +P E+R+  LRL Q+  H DP +RL   +A
Sbjct: 51  SITGEALGYALELGLPVHYLTQFGKYVGSALPSESRNGQLRLAQFRAHEDPIQRLDIVKA 110

Query: 137 VVTAKLRNAAAVL--RGIRSNQASSAALASAITQTEASAEAAAAAVSAESLLGIEGNGAH 194
            V  K+ N   +L  RG   N            QT             E + GIEG  A 
Sbjct: 111 FVKGKVHNQYNLLYRRGQVDNPLKGRGKLVMRQQT------------LEQVRGIEGLAAR 158

Query: 195 QYFAGLRTAFVGGIPFLGRAQRPPPDPANSLLSFGYVLLGNRLTGLLEARGVDPCLGFFH 254
           +YFA  +        F GR +RPP DP N+LLSFGY LL  ++T  +   G+DP +GF H
Sbjct: 159 EYFASWQEMLGHEWTFTGRFRRPPTDPVNALLSFGYGLLRTQVTAAVHIAGLDPYIGFLH 218

Query: 255 DLRPGRPSLALDLLEELRHPVVDRLALRICNLRKIQPQHFEPDAERPGGVKLTVDGRKIF 314
           +   G+P++ LDL+EE R  V D + L +   R+IQ Q F    E  G  +LT    K F
Sbjct: 219 ETTRGQPAMILDLMEEFRALVADSVVLTVLKQREIQRQDF---TESLGAFRLTDSATKTF 275

Query: 315 LEEWEGHLARPLREPGVAAEHRLDVHRLLQRQVDRLVSDLRGGEPYRP 362
           L  ++  L+   + P     ++    R ++ Q   L   L+ G  Y P
Sbjct: 276 LGAFDRKLSSEFKHP--IFNYKCTYRRAIELQARLLARHLQEGVVYEP 321