Pairwise Alignments

Query, 1052 a.a., Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) from Rhodospirillum rubrum S1H

Subject, 1051 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N2E2

 Score =  977 bits (2525), Expect = 0.0
 Identities = 510/1050 (48%), Positives = 692/1050 (65%), Gaps = 7/1050 (0%)

Query: 1    MAQLFIKRPILAWVFAIFISIAGIIALPLLPVAQYPNVAPPQLSLYTTYPGASPQEIYQG 60
            M++ FI RPI AWV A+ I + G +++  LP+ QYP++APP +++  +YPGAS Q +   
Sbjct: 1    MSKYFIDRPIFAWVLALIIMLVGALSILNLPINQYPDIAPPAVAIQVSYPGASAQTVQDT 60

Query: 61   VTRLIEEELNSVDNLIYFESTSDSTGGITINATFQPGTNLQQASVNVQNAIRSVASRLPA 120
            V ++IE+++N +DNL Y  S S++ G + I  TF  GTN   A V VQN +      LP 
Sbjct: 61   VVQVIEQQMNGIDNLRYISSESNADGSMRIIVTFNQGTNPDIAQVQVQNKLNLATPLLPR 120

Query: 121  AVTAQGVTVEEVTAGFLMLITLTSTDGAVDEVGLGDYLNRNMLGELRRIDGVGKAQLFSA 180
             V  QG+ V +    F+M I L STDG   +  L +Y+  N+   + R  GVG  Q++  
Sbjct: 121  EVQQQGLRVTKFQQNFMMFIGLVSTDGKHTKEDLSNYIVSNIQDPISRTSGVGDFQIWGT 180

Query: 181  QRAMRVWIDPDKMVGLKLTVGDINTAITTQNAQVAAGQIGAAPNPVSQDLTATVLVKGQL 240
            Q AMRVW+DP K+   +LT  D+  AI  QN QVA+G IG  P       TAT++ K +L
Sbjct: 181  QYAMRVWLDPAKLNQFQLTPVDVTEAIEAQNVQVASGTIGGLPARKGTVFTATIIGKTRL 240

Query: 241  TDIEEFGNIVLRANPDGSTVRLKDVARLEVGAESYNFSSRLNGQPSAAVAIQLSSTGNAV 300
               E+FG+I+L+ N DGS VRL DVA + +G E+Y+ +++ NG+P++ +AI+L++  NA+
Sbjct: 241  QTSEQFGDILLKVNSDGSQVRLSDVADISLGGENYSINAQANGKPASGIAIRLATGANAL 300

Query: 301  ATSAAIKAKLDELSRFFPSGVQYDVPYDTSPFVSASIQKVLMTLLEAVGLVFLVMFVFLQ 360
             T+ AI+A +D L  FFP+G++   PYDT+P V+ SI  V+ TL EAV LVFLVM +FLQ
Sbjct: 301  DTARAIRATVDRLKPFFPAGIEAVYPYDTTPVVTESISGVMHTLGEAVVLVFLVMLLFLQ 360

Query: 361  NFRYTVIPTLVVPIALLGTSAAMLATGFSINVLTMFAMVLAIGILVDDAIVVVENVERIM 420
            N R T+I TL VP+ LLGT   + A GFSIN LTMF M+LAIG+LVDDAIVVVENVER+M
Sbjct: 361  NLRATIITTLTVPVVLLGTFGVLAAAGFSINTLTMFGMILAIGLLVDDAIVVVENVERVM 420

Query: 421  AEEGLSPKAATNKAMTQITSAILGITLVLSSVFIPMAFFPGSTGIIYRQFSLTMVVSILF 480
            AEE LSP+ AT K+M QI  A++GI LVLS+V +PMAFF GSTG+IYRQFS+T+V ++  
Sbjct: 421  AEEHLSPREATRKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMAL 480

Query: 481  SAFLALSLTPALCATFLKPIKQGHH--DKKGLGGWFNRKFDRLTAGYSRSVTGLVRRAGR 538
            S F+AL  TPALCAT LKPI    H   K+G  GWFNR+FD    GY + V  ++R    
Sbjct: 481  SVFVALVFTPALCATLLKPIDPTKHGQPKRGFFGWFNRRFDACVNGYEQGVGQIIRHRVP 540

Query: 539  VMVVYLALVVGLGYLFVNLPSGFVPNEDQGYFLVDVQGPPEASANRTVASIKQIEEIF-- 596
              +VYL +V G  ++F  +P+ F+P+EDQG     VQ P  +SA  T   + ++ +    
Sbjct: 541  GFMVYLVIVAGTIWMFARIPTSFLPDEDQGLIFTQVQTPANSSAETTQKVLDRMSQYLLD 600

Query: 597  --KGE-SAVRDVLVIQGFSFSGSGANAAMVFVTLKDWKERGAGNTVDEITERVNMRLFAL 653
               GE  AV  V  + GF+F+G G N+ + FV LK W ER + NTV +I +R        
Sbjct: 601  KEHGEGKAVATVFTVNGFNFAGRGQNSGIAFVNLKPWDERDSDNTVFKIAQRAQQEFLKY 660

Query: 654  KDATSFALSPPPIEGFGTTNGFSFRLQDRSGLGQQALSSAAAKLMAKAEQSPVLTGLRIE 713
            +DA  +A+ PP +   G   GF F LQD+  +G Q L  A  K +  A QSPVL G+R  
Sbjct: 661  RDALVYAVVPPSVLELGNATGFDFYLQDQDSVGHQKLMEARGKFLELAAQSPVLAGVRPN 720

Query: 714  GLPDAAQVVLVINREKANTFGVTFADINSTITANLGSSYINDYPNAGRMQRVIVQAQDRD 773
            GL D  Q  L I+ E+A   G++ ADIN+T++   GSSY+ND+ + GR++RV VQ Q   
Sbjct: 721  GLADEPQYHLTIDDERARAMGISLADINTTLSVAYGSSYVNDFVDRGRVKRVYVQGQPDS 780

Query: 774  RLQADDLLKLNVRNAGGGMVPLSSFAIAEWQKGAPQIVGYNGYPTVRIAGEPVPGQSTGA 833
            R  A+DL K  VRN  G MVP S+FA AEW  G+P++  YNG P  +I G P PG S+G 
Sbjct: 781  RSTAEDLSKWFVRNNQGQMVPFSAFASAEWIFGSPKLSRYNGVPAEQILGTPAPGYSSGQ 840

Query: 834  AIAEMERLASELPEGFGFEWTGQALEEIKSGSQAPMLFGLSILFVFLLLAGLYESWSIPL 893
            A+AE+ER+A +LP G G  +TG + EE  SGSQAP L+ LSIL VFL LA LYESWSIP+
Sbjct: 841  AMAEVERIAEQLPPGVGISFTGLSYEERLSGSQAPALYALSILVVFLCLAALYESWSIPI 900

Query: 894  SVMLVVPLGAIGCVLAVMMRGMPNDIYFKVGLIAIIGLSAKNAILIVEFAKDYFAQGRSL 953
            +V+LVVPLG IG ++A  +RG+ ND++F+VGL+  +GL+AKNAILIVEFAK+   +G+ L
Sbjct: 901  AVILVVPLGVIGALMATALRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELNEKGQPL 960

Query: 954  FDSAVDAARVRFRPIVMTSLAFALGVVPLAIATGPSAASQNAIGTGVLGGIILGTILAIF 1013
             ++ V+A R+R RPIVMTSLAF LGV+PL I++G  + SQ+AIGTGV+GG+I  T+LAIF
Sbjct: 961  LEATVEACRMRLRPIVMTSLAFILGVLPLTISSGAGSGSQHAIGTGVIGGMITATVLAIF 1020

Query: 1014 FVPAFFVFVLKLFRTKRPVEDHEDDKPETG 1043
            +VP FFV +  LF+  R   D    + E G
Sbjct: 1021 WVPLFFVSISTLFKGSRKKRDETAMREEAG 1050