Pairwise Alignments

Query, 343 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

Subject, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

 Score =  224 bits (571), Expect = 2e-63
 Identities = 137/311 (44%), Positives = 180/311 (57%), Gaps = 8/311 (2%)

Query: 20  AAPIVYERAVDAEAAGQRLDKWLATVIPTLSRARLQQLIGEKRVSVNGQTIGEGSRRVKP 79
           A  I   + V     GQRLD+ +A +    SR+RL++ + E +++VNG  I +   +V  
Sbjct: 2   AHQIELTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMG 61

Query: 80  GQTVRVEEPPPIAATPQPEAIALTVVYEDDDLIVIDKAAGMVVHPGPGNPDHTLVNALLA 139
           G+ + V+         + + + L +VYEDDD+IVI+K    VVHPG G  D T++NALL 
Sbjct: 62  GEVITVQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLF 121

Query: 140 HCGPSLSGIGGERRPGIVHRLDKDTSGLMIAAKTDLAHHGLAEQFACHSLTREYLCLVWG 199
           H  P    I    R GIVHRLDKDT+GLM+ AKT  A   L        +TREY  +V G
Sbjct: 122 HYSP----IAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIG 177

Query: 200 RPRPAAGSIDAPLGRHPTQRKKMAVVSRGGKRALTHYRVVGDVEGIASIVKCTLSTGRTH 259
               A G ID P+GRH T+R  M+ VS  GK A+THYRV         + +  L TGRTH
Sbjct: 178 -TMTAGGMIDKPIGRHSTKRTLMS-VSPMGKHAVTHYRVAEHFREHTRL-RLRLETGRTH 234

Query: 260 QVRVHMAHIGHPLLGDAVYGHR-NIPKKLPGDLSERIARLTRQALHSFHLGFLHPRTGES 318
           Q+RVHMA++ HPLLGD  YG R  IPK    +L+E I    RQALH+  L F HP TGE 
Sbjct: 235 QIRVHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEE 294

Query: 319 LEFLSELPLDI 329
           LEF + +P D+
Sbjct: 295 LEFHAPVPDDM 305