Pairwise Alignments

Query, 299 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

Subject, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

 Score =  216 bits (551), Expect = 4e-61
 Identities = 121/286 (42%), Positives = 178/286 (62%), Gaps = 10/286 (3%)

Query: 1   MATVAPGLSIGPESNLTRYLQNIRKFPMLAPEEEYTLAQRLRDSGDSEAAHRLVTSHLRL 60
           M   A  +++  + +L  Y++++  +PML+ +EE  LA+RL   GD +AA  L+ SHLR 
Sbjct: 1   MTNQAYPMALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRF 60

Query: 61  VAKIAMGYRGYGLPMGEVISEGNVGLMQAVKRFDPERGFRLATYAMWWIRAAIQEYILHS 120
           V  +A GY GYGLPM +++ EGN+GLM+AVKRF+PE G RL ++A+ WI+A I EY+L +
Sbjct: 61  VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRN 120

Query: 121 WSLVKMGTTAAQKKLFFNLRKMKGQLQLMDEGDMHPDKVTQIATKLGVPEQDVINMNRRL 180
           W +VK+ TT AQ+KLFFNLRK K +L   + G+     V  +A +LGV   +V  M  RL
Sbjct: 121 WRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGE-----VETVARELGVEPAEVREMESRL 175

Query: 181 SSPDHSLNAPVRMDGDGEWQDWLVDESDDQETTLAESQEMGQRRA----LLSGALKSLNE 236
           ++ D +       D +G      V   +D+ + LA++ E     A     LS AL SL+E
Sbjct: 176 AAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDE 235

Query: 237 RERHILTQRRLRDD-PVTLEDLSQHYGISRERVRQIEVRAFEKLQK 281
           R +HI+  R L DD   TL+DL++ YG+S ER+RQ+E  A  KL++
Sbjct: 236 RSQHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKE 281