Pairwise Alignments

Query, 299 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

Subject, 310 a.a., principal RNA polymerase sigma factor SigA from Synechococcus elongatus PCC 7942

 Score =  105 bits (263), Expect = 1e-27
 Identities = 85/291 (29%), Positives = 148/291 (50%), Gaps = 34/291 (11%)

Query: 15  NLTRYLQNIRKFPMLAPEEEYTLAQRLR--------DSGD--------------SEAAHR 52
           N++ YL +I + P+L  ++E  L Q+++         S D                A  R
Sbjct: 19  NVSWYLSSIGRIPLLTADQEIELGQKVQVMMNLLEETSSDRTFTEAETAAIQLGQRAKER 78

Query: 53  LVTSHLRLVAKIAMGYRGYGLPMGEVISEGNVGLMQAVKRFDPERGFRLATYAMWWIRAA 112
           ++ ++LRLV  +A  Y+G GL   ++I EG +GL +AV++FDP +G++ +TYA WWIR +
Sbjct: 79  MIKANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAFWWIRQS 138

Query: 113 IQEYILHSWSLVKMGTTAAQKKLFFNLRKMKGQLQLMDEGDMHPDKVTQIATKLGVPEQD 172
           +   I      +++     ++     +RK+    +L  E    P +  +IA  + +P  D
Sbjct: 139 MTRAIACQSRTIRLPVHLTER--LSQIRKV--TRELAHELGRLPSR-QEIAEAVQLPLND 193

Query: 173 VINMNRRLSSPDHSLNAPVR-MDGDGEWQDWLVDESDDQETTLAESQEMGQRRALLSGAL 231
           +  + R+ S    SL+APV   DG     + + D + ++   + E+     +R  L   L
Sbjct: 194 LETILRQ-SRQCTSLDAPVSGEDGKSFLGELIADPNGNEPMDIMEN---AMQREQLDAWL 249

Query: 232 KSLNERERHILTQR-RLRD-DPVTLEDLSQHYGISRERVRQIEVRAFEKLQ 280
           + L  +ER +L  R  L D +  TL ++ +   +SRERVRQ+EV+A  KL+
Sbjct: 250 EHLTPQERQVLYLRFGLGDGERHTLAEIGRMMEVSRERVRQVEVKALRKLR 300