Pairwise Alignments

Query, 640 a.a., Peptidase M41, FtsH (NCBI) from Rhodospirillum rubrum S1H

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

 Score =  206 bits (524), Expect = 3e-57
 Identities = 113/285 (39%), Positives = 170/285 (59%), Gaps = 20/285 (7%)

Query: 152 VTFDDVAGIDEAKQELEEVVEF-LRDPQKFQRLGGKIPKGVLLVGPPGTGKTLLARAIAG 210
           + + DV G+++ KQ+L+E VE+ +++ + F+R+G + PKGVLL GPPGTGKTLLA+A+A 
Sbjct: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563

Query: 211 EANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCLIFIDEIDAVGRHRGAGLGGG 270
           E+   F ++ G +    +VG     +R++F + ++ AP +IF DEID+V   RG   G  
Sbjct: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS 623

Query: 271 NDEREQTLNQLLVEMDGFEANEGVILIAATNRPDVLDPALLRPGRFDRQVTVSNPDIMGR 330
               E+ +NQLL E+DG E  + V++IAATNRPD+LD ALLRPGR DR V V  P+   R
Sbjct: 624 G-VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETAR 682

Query: 331 EKILKVHMRKTPLGPDVDAKVIARGTPGFSGADLSNLVNEAALLAARKG----------- 379
            +I KVH +  P+G DV+ + +A+ T G++GAD+  +  EAA++A R+            
Sbjct: 683 LEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHF 742

Query: 380 ----KRV---VTMAEFEEAKDKVLMGAERRSMVMTEDEKEKTAYH 417
               KR+   V   + +E KD      +   +   E   E T YH
Sbjct: 743 DGAFKRIAPSVKDDDMDEYKDLAKEYGQNAGVSEIEKGPENTGYH 787



 Score =  191 bits (485), Expect = 1e-52
 Identities = 113/295 (38%), Positives = 172/295 (58%), Gaps = 20/295 (6%)

Query: 143 KLLTEKTGRVTFDDVAGIDEAKQELEEVVEF-LRDPQKFQRLGGKIPKGVLLVGPPGTGK 201
           +L   K   VT++D+ G+ E  +++ E+VE  +R P+ F +LG + PKGVLL GPPGTGK
Sbjct: 165 ELKETKVPNVTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGK 224

Query: 202 TLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCLIFIDEIDAVGR 261
           TLLA+A+A EA   F+TI+G + +  +VG     +R +FE+ ++N+P +IFIDEIDAV  
Sbjct: 225 TLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAP 284

Query: 262 HRGAGLGGGNDEREQTLNQLLVEMDGFEANEGVILIAATNRPDVLDPALLRPGRFDRQVT 321
            R    G   +   + + QLL  MDG E+   ++++AATNRPD +D AL RPGR DR++T
Sbjct: 285 KRDEASG---EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREIT 341

Query: 322 VSNPDIMGREKILKVHMRKTPLGPDVDAKVIARGTPGFSGADLSNLVNEAALLAARKGKR 381
           +  PD  GR +IL++H R  PL PD +   +         + L+ LV E          +
Sbjct: 342 IGIPDRHGRNEILQIHTRNMPLQPDYEKSDVI--------SILNELVGEYDRSKIESLVK 393

Query: 382 VVTMAEFEEAKDKVLMGAE-------RRSMVMTEDEKEKTAYHEAGHALIAIHQE 429
           +V  A  EE  +K+L   E       + + +M ++  +KT +  AG  L A+ +E
Sbjct: 394 LVEKASSEEEIEKILKDGEVEDKVKVKLNQLMVKELADKT-HGFAGADLAALSKE 447