Pairwise Alignments

Query, 375 a.a., OmpA/MotB (NCBI) from Rhodospirillum rubrum S1H

Subject, 280 a.a., putative flagellar motor protein MotB (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 96.7 bits (239), Expect = 7e-25
 Identities = 77/252 (30%), Positives = 130/252 (51%), Gaps = 22/252 (8%)

Query: 130 VAALKALRAELEAEVARLGGQLGEKEGQIAAERT-LSEEARAHAALLNAQLEQLQAQLGA 188
           +A++ +L++ L  +    G QL  +  ++  + T +    R + ++L+  + + Q +L A
Sbjct: 32  IASIDSLQSLL-TDCRNTGDQLSAQIKKLLRDTTQMGNSIRQYQSMLSTNMTE-QEKLNA 89

Query: 189 IQQALDASEARSAEQKVVIADLGTRLNAALAEKVQELQRYRSEFFGRLREVLGAREDVRI 248
           +   L   +   +E++  I +L   +NA   +  Q L   +    G   + L  RE    
Sbjct: 90  L---LSQKKNELSERERTINELQDMINAQNEKVKQLLNSVKDALLGFSTDELTVREKD-- 144

Query: 249 VGDRFVFQSE-VLFPSGSSQLQPAGQDTLASLATTLMAIAARIPGDVDWILRVDGHTDRR 307
            G  +V  S+ +LF SGS++L   G++ L  LA  L         D+D  + ++GHTD +
Sbjct: 145 -GKVYVAMSDKLLFQSGSARLDKRGEEALGKLAEVLNKQT-----DID--VFIEGHTDNK 196

Query: 308 PINTAAFQSNWQLSAARAISVVNFLIER-GVPPERLAAAGFGEYQPIDPGQSDEALARNR 366
           PINT  F+ NW LS  RA SVV  LI+  GV P ++  +G GEY P+D  ++ E  ++NR
Sbjct: 197 PINTVQFKDNWDLSVIRATSVVRILIKNYGVNPLQIQPSGRGEYMPVDDNETAEGRSKNR 256

Query: 367 RIEL----KLDQ 374
           R E+    KLD+
Sbjct: 257 RTEIIMAPKLDK 268