Pairwise Alignments

Query, 520 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 678 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  175 bits (444), Expect = 4e-48
 Identities = 152/585 (25%), Positives = 253/585 (43%), Gaps = 115/585 (19%)

Query: 44  ALDQLPVPVILARPDMVISWMNRATRRSLERIAHLLPVAPED-------VVGQSIDVFHR 96
           AL+     +++   D  I++ N  T + L++   L      D       + G  ID FH 
Sbjct: 43  ALNAAQTALMMIDRDFRITYFNNQTLKLLKQHETLFRSVWPDFRAEADFLHGYCIDHFHL 102

Query: 97  HPAHQRALMAKPGALPHHAVIALGDEFLDLQIEAL-GERAAPKAYVLTWSIVTERVKAER 155
           +P HQR ++A P  LP+  VI +    ++L + A+  +R +     L W  VTE +  ++
Sbjct: 103 NPRHQRTMLADPSHLPYTTVINIKGVKIELIVGAIIDDRGSYIGNTLEWRDVTEELLRDQ 162

Query: 156 LVSQRNHMLDQLPVNVMLADPKTMLITYANRTSLDTLAK-----LQHLMSFSVSDLVGRS 210
            + +    ++ +  N+M+AD K  +I Y N   L  L        Q    F  ++LVG++
Sbjct: 163 QIGRLASAVEGMTTNLMMAD-KEGIIQYLNPALLQLLTHREPELAQAFPGFKAAELVGKN 221

Query: 211 IDIFHKNPSHQHAILSDPKRLPFHSKIRLGPETLDLRVTAIFGERGEYEAMLLCWSVSTH 270
           IDIFHKNP+HQ +I+S+P+RLPF S I++G    +L   A+   +GEY    L W   T 
Sbjct: 222 IDIFHKNPAHQRSIISNPERLPFTSMIKVGSLEFNLTCIAMRDTKGEYIGPALQWVDITE 281

Query: 271 --------------------------------LVKLADDFESHIKGFADMIGSASTQLHS 298
                                           + +L D   + +    + +G   T +  
Sbjct: 282 QRDGQRQVESLIQKAIKGDLHDRINTSGYNGFMRELGDGINNLLNTLVEPLGQCITVMSR 341

Query: 299 TAE---------------------------SMSGAAEEASSQAAGVSAAAEELSASVQEL 331
            AE                           ++    ++ +  +A V+ A+ E++    +L
Sbjct: 342 VAEGDLNTSMSEEYQGEFGRLASAVNASIVNLRNMVDKITVSSARVATASTEIADGNNDL 401

Query: 332 GCRLKASQTLLEQARAAAQTSTSEVIQLRD------------------------------ 361
             R++A  + LE+  A+ +  T+ V Q  D                              
Sbjct: 402 SQRVEAQASNLEETAASMEEITATVRQNADNAKDANLLATDAAKKAARGGEVVGEAISAM 461

Query: 362 -----AAQQIDSVIDVIGEIAGQTNLLALNATIEAARAGEHGRGFAVVAGEVKDLSAQTA 416
                A+++I  +I VI EIA QTNLLALNA +EAARAGE GRGFAVVAGEV++L+ ++A
Sbjct: 462 GAINTASKKIADIISVIDEIAFQTNLLALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSA 521

Query: 417 KATGSITG-------EIRNIQTSTDATVGTIDTIVTLVEEITGVFSAMQDSIAIQSEATR 469
            A   I G       ++       + +  T+  IV  V  ++ + + +  S   QS    
Sbjct: 522 GAAKEIKGLINDSVDKVNEGSRLVNESGSTLKEIVEAVVRVSDLIAQIAASSVEQSTGID 581

Query: 470 EVARNITGVSEASSITSSAACDTMGAASELSRTAEALRGQVDNFL 514
           E+ R I  + E +   +S   +T  A+  L    + L   ++ F+
Sbjct: 582 EINRAIAAMDEMTQQNASLVEETSAASQSLKDEGKELLNLMNFFV 626