Pairwise Alignments

Query, 306 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

Subject, 298 a.a., RNA polymerase sigma-32 factor RpoH from Phaeobacter inhibens DSM 17395

 Score =  333 bits (853), Expect = 4e-96
 Identities = 169/283 (59%), Positives = 214/283 (75%), Gaps = 2/283 (0%)

Query: 8   LPAVSDEGGLSRYLTEIKRFPMLTPEEEFMLAKRLQDEGDRDAAHRLVTSHLRLVAKIAM 67
           LPA + EGGL+RYL EI++FP+L PEEE+MLAKR  +E D  +AH++VTSHLRL AKIAM
Sbjct: 7   LPAPTPEGGLNRYLQEIRKFPLLEPEEEYMLAKRWVEEQDSASAHKMVTSHLRLAAKIAM 66

Query: 68  GYRHYGLPVSDLVAEGNMGLMKAVKKFEADRGFRLATYAMWWIKASINEYILNSWSLVKV 127
           GYR YGLP +++++E N+GLM+AVK+F+ ++GFRLATYAMWWI+ASI EYIL SWSLVK+
Sbjct: 67  GYRGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWWIRASIQEYILRSWSLVKL 126

Query: 128 GTVAAQKKLFFNLRRLKAKLGVYEEGDLSPEDVKTIATQLKVTEADVVMMNRRLAGPDAS 187
           GT +AQKKLFFNLR+ KA++G  EEGDL P+ VK IAT L VTE +V+ MNRR++G DAS
Sbjct: 127 GTTSAQKKLFFNLRKAKARIGALEEGDLHPDSVKKIATDLGVTETEVISMNRRMSGGDAS 186

Query: 188 LNVPVGE--DQSMDRMDLLMDEGDNQEEVYAAHEEQSLGNRLLKDALSTLTERERHIITA 245
           LN  VG   + +M   D L DE  +Q   Y A +E      LL  AL  L +RE+ I+T 
Sbjct: 187 LNATVGSEGEGTMQWQDWLEDEDADQAGDYEARDELEARRELLASALEVLNDREKDILTQ 246

Query: 246 RRLRSEPVTLEELGGEYGVSRERVRQIENRAFEKLQTAVRKAA 288
           RRL  +  TLE+L  +YGVSRER+RQIE RAFEKLQ  +R+ A
Sbjct: 247 RRLADQAKTLEDLSTQYGVSRERIRQIEVRAFEKLQKKMRELA 289