Pairwise Alignments

Query, 487 a.a., Nitrogenase molybdenum-iron protein alpha chain (NCBI) from Rhodospirillum rubrum S1H

Subject, 458 a.a., nitrogenase from Methanococcus maripaludis S2

 Score = 52.4 bits (124), Expect = 3e-11
 Identities = 89/403 (22%), Positives = 164/403 (40%), Gaps = 71/403 (17%)

Query: 78  VKDMVHISHGPVGCGQYSWSQRRNYFTGQVGVDSFVTMQFTSDFQEKDIVFGGDKKLEKV 137
           VK+ + + HG  GC  Y   Q   +F   V V S       S   E + V GG++ L+  
Sbjct: 27  VKNSMPLIHGSHGCSTYMRFQLGRHFKEAVNVAS-------SSMSEANAVLGGEENLKHA 79

Query: 138 IDEIKGLF-PLVRGISIQSECPIGLIGDDIEAVARK-KAKDVGLP-IIPVRCEGFRGVSQ 194
           I  +  ++ P + G++  + C    IGDD+E + R  K ++  LP I+P+    ++    
Sbjct: 80  IRNVSKIYGPEIIGVT--TSCLSETIGDDVEGIIRLFKTQNDDLPEIVPISTPSYK---- 133

Query: 195 SLGHHIANDAIRDWVFSRDSESAFETTPYD-VNIIGDYNIGGDAWASRILLEEMGLRVI- 252
               H   +     V +     A  + P   +N+I      GD   ++ +L EMG+  I 
Sbjct: 134 ----HTHVEGYDSTVKALVENLATPSKPNSKLNVITGMVSPGDIAETKRILREMGIESII 189

Query: 253 ---------AQWSGD--------ATIAEMERAPKAKLNLIHCYRSMNYICRHMEEKHGV- 294
                    A + G+         T+ E++    +   +  C +  N   + + E +G+ 
Sbjct: 190 LTDTSESMDAPFDGEVSFVSSAGTTVEELKDTANSFATISLC-KHANSAAKFLHEAYGIN 248

Query: 295 ---PWMEYNFFGPSQIEKSLRAIAANFDETIQKKAEEVIAAHRPTVDAVINKYKARLEGK 351
              P++        +    L  +      T ++  E++       +DA+I+ ++    G+
Sbjct: 249 SVSPYLPIGLQSTDEFMNELCKL------TNKEIPEQITRERGKLIDAMIDAHQHNF-GR 301

Query: 352 RVMLY-----VGGLRPRHVMTAYEDLGM---QICGAGYEFAHSDDYQRTTEYAKEGTLIY 403
           +V +Y     V G   R V+    +LGM    +C         +D +  T+ +K   +I 
Sbjct: 302 KVAIYGDPDVVVGF-TRFVL----ELGMIPSIVCTGSESKTFVEDIKAVTKDSKHKPVIL 356

Query: 404 DDLTGYELERFIEKLRPDLV-----GSGI--KEKYAVQKMGVP 439
                Y+L + I+K + DL+     GS I   E   + +MG P
Sbjct: 357 APGDLYDLHQEIKKSKVDLLIGNSYGSRIAGAENIPLIRMGFP 399