Pairwise Alignments

Query, 340 a.a., Lysine-arginine-ornithine-binding periplasmic protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 342 a.a., ABC-type amino acid transport/signal transduction systems, periplasmic component/domain from Pseudomonas stutzeri RCH2

 Score =  475 bits (1223), Expect = e-139
 Identities = 233/342 (68%), Positives = 279/342 (81%), Gaps = 2/342 (0%)

Query: 1   MKKMIAALAAFGAAGVIA-SGSAMAASTLDTVKSRGEVTCGVNNGLPGFALPDDKGHWTG 59
           M ++ + LA  GAA ++  SG A A +TLD V+ +G V CG+++GLPGF+  D KG + G
Sbjct: 1   MIRVKSTLAVLGAASLLGISGLAQAGATLDAVQKKGFVQCGISDGLPGFSFADAKGKYQG 60

Query: 60  IDVDICRAVAAAVFGDAKKVKFVPLNAKERFTALQSGEIDVLSRNTTWTQTRDASLGLIF 119
           IDVDICRAVAAAVFGDA KVK+ PL AKERFTALQSGE+DVLSRNTTWT +RDA++GL F
Sbjct: 61  IDVDICRAVAAAVFGDASKVKYSPLTAKERFTALQSGEVDVLSRNTTWTSSRDAAMGLNF 120

Query: 120 AGVNYYDGQGFMVKKELGVSSAKELNGASICIQSGTTTELNLADYFRANAMTYSPVVFDT 179
            GV YYDGQGF+V KELGVSSAKEL+GA++CIQ+GTTTELNL+DYFRAN   Y+P+ +DT
Sbjct: 121 TGVTYYDGQGFLVNKELGVSSAKELDGATVCIQAGTTTELNLSDYFRANGHKYTPITYDT 180

Query: 180 SDQTVQGFAGGRCDVLTSDQSQLYALRIKLEDPKSAIVLPEVISKEPLGPMVRQGDDQWL 239
           SD++ +    GRCDVLTSDQSQLYA RIKL  P   +VLPEVISKEPLGP VRQGD++W 
Sbjct: 181 SDESAKSLESGRCDVLTSDQSQLYAQRIKLAKPADYVVLPEVISKEPLGPAVRQGDEEWF 240

Query: 240 NIVRWSLFAQLNAEELGVTSANADEV-KAGTDQNVKRLLGTEGEMGKQLGLGNDWAYAIV 298
           +IVRW+LFA LNAEELGVTSAN +E+ K+  + +V RLLG EGE GK L L  DWA  IV
Sbjct: 241 DIVRWTLFAMLNAEELGVTSANVEEMAKSTKNPDVARLLGAEGEYGKDLKLPKDWAVQIV 300

Query: 299 KQVGNYGEMFERNIGKGSPLEIERGLNALWNKGGIQYAPPIR 340
           KQVGNYGE+F+RN+G GS L+IERGLNALWN GG+QYAPP+R
Sbjct: 301 KQVGNYGEIFDRNVGAGSELKIERGLNALWNNGGLQYAPPVR 342