Pairwise Alignments

Query, 306 a.a., pyruvate-formate lyase-activating enzyme (NCBI) from Rhodospirillum rubrum S1H

Subject, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 58.2 bits (139), Expect = 3e-13
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 16/87 (18%)

Query: 37  LACRWCSN-------PESQRFDAVLMYKKSSCVGCGKCIEVCKAGALSFSNPE------- 82
           ++C WC+N          + F+  L+  + +C  CG CI VC   AL F  PE       
Sbjct: 243 VSCGWCANICPADAIEVEKPFEGELIIDEPACNACGACISVCPCNALVFPQPEKQGDKVP 302

Query: 83  --FIDRDKCVRCGACANVCLPGALTMK 107
              +++D C+ CGAC + C   ALT+K
Sbjct: 303 NVVVNQDVCILCGACTHSCPVDALTVK 329



 Score = 43.5 bits (101), Expect = 7e-09
 Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 35  CPLACRWCSNPESQRFDAVLMYKKSSCVGCGKCIEVCKAGALSFSNP----EFIDRDKCV 90
           CPLA +                 K  CV CG C  +C A A+    P      ID   C 
Sbjct: 216 CPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANICPADAIEVEKPFEGELIIDEPACN 275

Query: 91  RCGACANVCLPGAL 104
            CGAC +VC   AL
Sbjct: 276 ACGACISVCPCNAL 289



 Score = 41.2 bits (95), Expect = 4e-08
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 11/58 (18%)

Query: 53 VLMYKKSSCVGCGKCIEVCKAGAL-----------SFSNPEFIDRDKCVRCGACANVC 99
          VL +   +CVGCG C E+C   A+               P+    +KCV CG CA  C
Sbjct: 24 VLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACAC 81



 Score = 38.1 bits (87), Expect = 3e-07
 Identities = 28/94 (29%), Positives = 34/94 (36%), Gaps = 19/94 (20%)

Query: 30  VFLKGCPLACRWCS----NPESQRFDAVL---MYKKSSCVGCGKCIEVCKAGALSFSNPE 82
           V  + C L C  C+        +R   VL     KK  CV CG C E C A A+     +
Sbjct: 116 VLCEQCELVCPQCAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIELIPND 175

Query: 83  F------------IDRDKCVRCGACANVCLPGAL 104
                        ID D CV C  C   C   A+
Sbjct: 176 MNALSLNPIADIKIDLDACVYCKVCEKACPHNAI 209



 Score = 33.5 bits (75), Expect = 7e-06
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 45  PESQRFDAVLMYKKSSCVGCGKCIEVCKAGALSFSN--PE---------FIDRDKCVRCG 93
           P+  +    +   +S CV C +C  VC   A+      PE          I +D CV CG
Sbjct: 99  PQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITIKKDDCVLCG 158

Query: 94  ACANVCLPGALTM 106
            CA  C   A+ +
Sbjct: 159 ICAEYCPADAIEL 171



 Score = 33.1 bits (74), Expect = 1e-05
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 20/68 (29%)

Query: 60  SCVGCGKCIEVCKAGALS-----------FSNPEF---------IDRDKCVRCGACANVC 99
           +CV C  C + C   A+               PE          ID++ CV CG CAN+C
Sbjct: 193 ACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANIC 252

Query: 100 LPGALTMK 107
              A+ ++
Sbjct: 253 PADAIEVE 260



 Score = 27.3 bits (59), Expect = 5e-04
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 16/65 (24%)

Query: 51  DAVLMYKKSSCVGCGKCIEVCKAGALSFS--------NPEF--------IDRDKCVRCGA 94
           DA  +     CV CG C   C   A+  S         P++        +++ KCV C  
Sbjct: 61  DAPKLDISEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQ 120

Query: 95  CANVC 99
           C  VC
Sbjct: 121 CELVC 125



 Score = 25.0 bits (53), Expect = 0.003
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 89  CVRCGACANVCLPGALTM 106
           CV CG C+ +C   A+ M
Sbjct: 32  CVGCGICSEICPTSAIEM 49