Pairwise Alignments

Query, 846 a.a., Pyruvate formate-lyase (NCBI) from Rhodospirillum rubrum S1H

Subject, 1128 a.a., choline trimethylamine-lyase from Klebsiella michiganensis M5al

 Score =  410 bits (1054), Expect = e-118
 Identities = 285/844 (33%), Positives = 408/844 (48%), Gaps = 72/844 (8%)

Query: 10   TDRVMRLKNEILNAKPYVESERAVLVTEAYKETEGLPAILRRAKAAEKIFNNLPVTIRND 69
            T R+ RL+N  L  +P V   RA+  TE  K   G+P IL RAKA        P+ I++D
Sbjct: 341  TPRMQRLRNHYLTVRPSVSIYRALAFTEVVKANPGMPTILLRAKAFRHACETAPILIQDD 400

Query: 70   ELIVGAITKNPRSTEICPEFSYDWVEKEFDTMATRLADPFLIPKETAKELHDAFL-YWPG 128
            ELIVG     PR+    P+ ++ WV  E DTM+TR  DPF I +   K + +  + +W G
Sbjct: 401  ELIVGHPCGKPRAGAFSPDIAWRWVRDELDTMSTRPQDPFEISEADKKTIREEIVPFWEG 460

Query: 129  KTTSDLASSYMSQEAKDCIASGVFTVGNYFY---GGVGHVCVDYGKVLKI-GFRGIITEV 184
            ++  ++  +   +EA     SG   V +  Y    G G  C  Y  +L   G  GI  + 
Sbjct: 461  RSLDEICEAQY-REAGVWAFSGETFVSDLSYHQINGGGDTCPGYDVLLFTKGMNGIKADA 519

Query: 185  VQAMEKMDRMDPDYIKKQQFYNAVIIAYTAAINFAHRYAAKALELAQNEANPTRKAELLQ 244
               +  +   +P+ I +  +Y A I      IN++HR AA+A ELA  E N  R+AELL 
Sbjct: 520  EAHLASLSMENPEDIDRIYYYKAAIETCEGVINYSHRIAARARELAAIEQNAQRRAELLT 579

Query: 245  IAQNCARVPENGATTFYEACQSFWFVQCLLQIESSGHSISPGRFDQYMYPFLCAD---KS 301
            IA+    VP N   T  EA QS W V+ L +IE +   +S GR DQY YP   AD     
Sbjct: 580  IAEVNQNVPANPPKTLQEALQSIWTVESLFEIEENQTGLSLGRVDQYCYPMFEADIREGR 639

Query: 302  IDKGFAQELVDCIWIKLNDVNKTRDEVSAQAFAGYAVFQNLCVGGQTEGGLDATNEISYM 361
            +    A EL+    IK  ++     E+ A+ FAGY  F NL VGGQ   G DA N+++Y+
Sbjct: 640  LTHDSALELLQAFIIKCAELMWMSSELGAKYFAGYQPFINLTVGGQKRSGGDACNDLTYL 699

Query: 362  CMEATAHVRLPAPSFSIRVWQGTPDDFLHRACEVVRLGLGVPAMYNDEVIVPALQNRGVT 421
             M+A   V++  PS + R+   +P  ++ +  +VV+ G+G PA + D+  +  +  +G  
Sbjct: 700  IMDAVRFVKVYQPSLACRIHNQSPQKYMEKIVDVVKAGMGFPACHFDDSHIKMMLRKGFD 759

Query: 422  LHDARNYGIVGCVEPQCIHKTEGWHDAAFFNVAKVLEITLNNGKAG--GKQLGPVTGEFT 479
              DAR+Y ++GCVEPQ   +   W    +      +E  LN G+        G  TG+  
Sbjct: 760  FEDARDYCLMGCVEPQKSGRIYQWTSTGYTQWPIAIEFVLNRGRMVLFDSYQGLDTGDLR 819

Query: 480  SFRNMDDLYAAFQKQMAYFVHYLVEADNCVDLAHGERCPLPFVSALVDDCIGRGKSLQEG 539
              R  ++  AA ++Q+A+ V             H +  P P +S LV+ C+ +GK +  G
Sbjct: 820  DLRTFEEFDAAVKQQIAHIVRLSAIGTVISQRVHRDVAPKPLMSLLVEGCMEKGKDVAAG 879

Query: 540  GAIYNFTGPQAF-GVADTGDSVYAIQKNVFEDKKITLAEMKEALDANFGLPVGGSAPSAG 598
            GA+ N      F G+A   DS+ AI+K VFE+KK                          
Sbjct: 880  GAMINHGPGLIFSGLATYVDSMAAIRKLVFEEKK-------------------------- 913

Query: 599  GDFTEEQVFAAVRKVLSSNGSMDVSALKGEVYRTLSGQAAPAAGGSSTKYDAIRRLLDAS 658
              +T EQV    R  L +N        KG                       +RR    +
Sbjct: 914  --YTLEQV----RDALLAN----FEGFKG-----------------------LRRDCLNA 940

Query: 659  PAFGNDIDDVDMVARECALIYCREVEKYTNPRGGQFQAGIYPVSANVLFGKDVAALPDGR 718
            P +GND + VD  A +      RE  KY          G   +S N   G+   A P+GR
Sbjct: 941  PKYGNDDNYVDQYALDITEWTERECRKY-KMLYSTLSHGTLSISNNTPIGELTNATPNGR 999

Query: 719  LAKAPLADGVSPRPGQDVKGPTAAANSVAKLDHFIASNGTLYNQKFLPSALAGDAGLQNF 778
            LA  PL+DG+SP  G D +GPTA   SV+K++    + G ++N KFL   L    G    
Sbjct: 1000 LAWMPLSDGISPTQGADKQGPTAIIKSVSKMNVETMNIGMVHNFKFLKGLLDTPEGRHGL 1059

Query: 779  ASLVRSYFDHKGMHVQFNVIDRQTLLDAQLEPEKHNDLVVRVAGYSAQFVVLAKEVQDDI 838
             +L+R+        +QF+ +D + L  AQ EPEK+ DL+VRVAGYSA FV L KEVQD+I
Sbjct: 1060 ITLLRTASILGNGQMQFSYVDNEVLKKAQQEPEKYRDLIVRVAGYSAYFVELCKEVQDEI 1119

Query: 839  ISRT 842
            ISRT
Sbjct: 1120 ISRT 1123



 Score = 79.0 bits (193), Expect = 1e-18
 Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 10/180 (5%)

Query: 207 AVIIAYTAAINFAHRYAAKALELAQNEANPTRKAELLQIAQNCARVPENGATTFYEACQS 266
           A I A  A +  A   A  A  LA  E N  RKAELL  A     VP + A +F EACQ+
Sbjct: 147 AAIYACDALLALAQNLANSAETLAAAETNAYRKAELLDSAAILHHVPAHPARSFKEACQA 206

Query: 267 FWFVQCLLQIESSGHSISPGRFDQYMYPFLCAD---KSIDKGFAQELVDCIWIKLNDVNK 323
           F+  Q  LQ+++  ++++P   D+ + P+   D    ++    A E+V+ +W KL ++++
Sbjct: 207 FYLFQLALQLDNGSYAVNPEGADKALLPYYQHDINNGALSPQQAYEIVESLWFKLAELSE 266

Query: 324 TRDEVSAQAFAGYAVFQNLCVGGQTEGGLDATNEISYMCMEATAHVRLPAPSFSIRVWQG 383
            R   +A A  GY +F  L  G   E      NE+S M +  +A   L A    +R++ G
Sbjct: 267 VR---AACAIDGYPMFDALQHGASLENA--RINELSDMFL--SAQQNLSALHLPVRLFSG 319



 Score = 41.2 bits (95), Expect = 3e-07
 Identities = 23/71 (32%), Positives = 39/71 (54%)

Query: 10 TDRVMRLKNEILNAKPYVESERAVLVTEAYKETEGLPAILRRAKAAEKIFNNLPVTIRND 69
          T RV  L   +L+ K  + +E A  ++    +  G+PA ++ A+   ++   LP++I  D
Sbjct: 7  TPRVKVLAERLLSQKSTLCTEHATTLSALDGDIAGVPAAVKPARRFYELMRQLPLSISAD 66

Query: 70 ELIVGAITKNP 80
          ELIVG  T+ P
Sbjct: 67 ELIVGNQTRKP 77