Pairwise Alignments

Query, 1052 a.a., Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) from Rhodospirillum rubrum S1H

Subject, 1061 a.a., multidrug-efflux system transmembrane protein from Sinorhizobium meliloti 1021

 Score = 1443 bits (3735), Expect = 0.0
 Identities = 723/1039 (69%), Positives = 870/1039 (83%), Gaps = 1/1039 (0%)

Query: 1    MSLSKFFIDRPIFAGVISTVILLAGLISMVLLPISEYPEVVPPSVIVKAQFPGANPKVIA 60
            M+ S+FF+DRP+FAGV+S +I +AGLI M  LPISEYPEVVPP ++V+AQ+PGANP VIA
Sbjct: 1    MNFSRFFVDRPVFAGVLSVIIFVAGLIGMTGLPISEYPEVVPPQIVVRAQYPGANPAVIA 60

Query: 61   QTVATPLEEQINGVEDMLYMSSQAASDGTMTLTISFKLGTDPDLATQLVQNRVNQALTRL 120
            +TVATPLEEQINGVE MLYM SQA +DG MTLT++F+LGTDPD A QLVQNRV+Q   RL
Sbjct: 61   ETVATPLEEQINGVEGMLYMQSQATADGLMTLTVTFELGTDPDQAQQLVQNRVSQGEPRL 120

Query: 121  PEVTRQLGVTTVKSSPDLTMVVHLTSPNERYDMLYLRNYALLNVKDQLAKIQGIGSVQLF 180
            PE  R+LGVTTVKSSPDLT+VVHL SPN +YD+ YLRNY +LNVKD+LA++ G+G VQ+F
Sbjct: 121  PEEVRRLGVTTVKSSPDLTLVVHLISPNGQYDINYLRNYGVLNVKDRLARVDGVGQVQIF 180

Query: 181  GSGDYAMRIWLDPQKVAERGMTATEVIAAIRRQNVQVAAGVIGGPPYGTGVAVQVPVNAQ 240
            G GDY+MR+W+DP+K AERG+ A+++  A+R QNVQ AAGVIG  P   G+ +Q+ VNAQ
Sbjct: 181  GGGDYSMRVWIDPEKAAERGLAASDIANAVRGQNVQAAAGVIGASPSVPGLDLQLSVNAQ 240

Query: 241  GRLTDADEFREIIIKR-DGGVVTRLKDVARIDLDAAQYGLRSLLDNKPAVAIPVFQAPGS 299
            GRL   ++F +I++K  + G +TRL DVAR+++ AA Y LRSLLDNK AV + VFQAPGS
Sbjct: 241  GRLKTPEDFADIVVKSGESGEITRLGDVARVEMGAADYSLRSLLDNKAAVGMGVFQAPGS 300

Query: 300  NAIEISNQVRATMAELKKSFPEGLDYAIAYDPTVFVRGSIEAVVHTLLEAVALVVIVVIL 359
            NAI+IS  V   MAELK++ P+G+DY I YD T FVR SIE+V+HTLLEA+ALVV+VVI+
Sbjct: 301  NAIQISENVHKVMAELKQTMPDGVDYEIVYDTTQFVRASIESVIHTLLEAIALVVVVVIV 360

Query: 360  FLQTWRASIIPLLAVPISIIGTFAVMHLFGFSINALSLFGLVLAIGIVVDDAIVVVENVE 419
            FLQTWRASIIPL+AVP+SI+GTFAVM++FGFSINALSLFGLVLAIGIVVDDAIVVVENVE
Sbjct: 361  FLQTWRASIIPLVAVPVSIVGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVE 420

Query: 420  RNIENGLSPRDATLKAMREVTGPIIAIALVLCAVFVPIAFISGLTGQFYRQFALTIAFST 479
            RNI  GLSP  AT +AM+EV+GPIIAIALVL AVFVP+AFI+GLTGQFYRQFALTIA ST
Sbjct: 421  RNISQGLSPVQATYRAMQEVSGPIIAIALVLVAVFVPLAFITGLTGQFYRQFALTIAIST 480

Query: 480  VISAFNSLTLSPALAVTLLRGEGAPKDALTRGMDRVLGPFFRGFNRVFHASSHGYGRGVG 539
            VISA NSLTLSPALA  LL+   APKD LTR MD + G FFRGFNR F ASS  YGRGVG
Sbjct: 481  VISALNSLTLSPALAALLLKDHHAPKDRLTRVMDGLFGWFFRGFNRFFGASSEAYGRGVG 540

Query: 540  GILGRKSLAMLVYVGLLGATYLGFAQVPPGFVPSQDKQYLVGFAQLPEGATLDRTESVIR 599
            GIL RKSL M VYV LLG T++ F  VP GFVP+QDKQYL+GFAQLP+ ATLDR+E VIR
Sbjct: 541  GILTRKSLVMGVYVVLLGVTFVLFRAVPGGFVPAQDKQYLIGFAQLPDAATLDRSEDVIR 600

Query: 600  AMSDIALRDPGVESAIAFPGLSINGFINSPSAGVVFVTLKPFEQRESAELSGFAISQRLQ 659
             MS+IAL+ PGVE AIAFPGLSINGF NS ++G+VFV+LKPFE+R + ELSG AI+ +L 
Sbjct: 601  RMSEIALKHPGVEHAIAFPGLSINGFTNSSNSGIVFVSLKPFEERTTPELSGGAIAMQLN 660

Query: 660  QRYAGVSEAFIAIFPPPPVQGLGTIGGFKLQVEDRTDQGYEALDQTMKAVLAKAATTPEL 719
            Q +  + +AFIA+FPPPPVQGLGT GGFKLQ+EDR   GY  LD   KAVLAKA   PEL
Sbjct: 661  QEFGAIQDAFIAMFPPPPVQGLGTTGGFKLQIEDRNGLGYRTLDDATKAVLAKAMAAPEL 720

Query: 720  AGVFSSYKIGTPELYADLDRTKAAQLGVDVQEVFDTMQIYLGSLYVNDFNKFGRTYQVIA 779
            AG++SS++I  P+LYADLDRTKA QLGV V +VF+T+QIYLGSLYVNDFN FGRTY V  
Sbjct: 721  AGLYSSFQINVPQLYADLDRTKARQLGVAVTDVFETLQIYLGSLYVNDFNAFGRTYSVRI 780

Query: 780  QADGAFRSKPDDILRLQTRNFDGRMVPLGAVVTLSDTSGPDSAMRYNAFRSADLNGGPAP 839
            QAD ++RS  DDI +L+ R+  G M+PL A++ +  T G + A+RYN F +AD+NGGPAP
Sbjct: 781  QADASYRSHADDIGKLKVRSQTGEMIPLSALLNVEQTVGAERAIRYNGFLAADINGGPAP 840

Query: 840  GYSTGQAQGAMTKLLAETLPKGMDFEWTELTYQQILAGNTTMMVFPLCVLLVFLVLAAQY 899
            G+S+GQAQ A+ ++ AETLP G+ +EWT+LTYQQILAGN+ ++VFPL +LLV+LVLAAQY
Sbjct: 841  GFSSGQAQAAIERIAAETLPPGISYEWTDLTYQQILAGNSGILVFPLALLLVYLVLAAQY 900

Query: 900  ESLFLPLAIILIVPLCLLSAITGVWLTGGDNNMFTQIGLFVLIGLACKNAILIVEFAREL 959
            ESL LP+AIILIVP+ +++A+TGVWLTGGDNN+FTQIGL VL+GL+ KNAILIVEFAREL
Sbjct: 901  ESLLLPIAIILIVPMGIMAALTGVWLTGGDNNVFTQIGLIVLVGLSAKNAILIVEFAREL 960

Query: 960  EIDGQDTVPAAIEAARLRLRPILMTSIAFIMGVVPLVISSGAGAEMRHAMGIAVFSGMLG 1019
            E+ G + V AAIEA+RLRLRPILMTS+AFIMGVVPLV S+GAGAEMR AMG+AVF+GM+G
Sbjct: 961  ELSGSNAVSAAIEASRLRLRPILMTSMAFIMGVVPLVTSTGAGAEMRSAMGVAVFAGMIG 1020

Query: 1020 VTVFGLFLTPVFYVLMRSL 1038
            VT FG+F+TPVFYVL+R L
Sbjct: 1021 VTAFGIFMTPVFYVLIRKL 1039



 Score = 48.1 bits (113), Expect = 3e-09
 Identities = 65/323 (20%), Positives = 140/323 (43%), Gaps = 30/323 (9%)

Query: 191  LDPQKVAERGMTATEVIAAIRRQNVQVAAG---VIGGPPYGTGVAVQVPVNAQGRLTDAD 247
            LD  K  + G+  T+V      + +Q+  G   V     +G   +V++  +A  R + AD
Sbjct: 738  LDRTKARQLGVAVTDVF-----ETLQIYLGSLYVNDFNAFGRTYSVRIQADASYR-SHAD 791

Query: 248  EFREIIIKRDGGVVTRLKDVARIDLDA-AQYGLRSLLDNKPAVAIPVFQAPGSNAIEISN 306
            +  ++ ++   G +  L  +  ++    A+  +R   +   A  I    APG ++ +   
Sbjct: 792  DIGKLKVRSQTGEMIPLSALLNVEQTVGAERAIR--YNGFLAADINGGPAPGFSSGQAQA 849

Query: 307  QVRATMAELKKSFPEGLDYA---IAYDPTVFVRGSIEAVVHTLLEAVALVVIVVILFLQT 363
             +    AE   + P G+ Y    + Y   +     I      L+  +AL+++ ++L  Q 
Sbjct: 850  AIERIAAE---TLPPGISYEWTDLTYQQILAGNSGI------LVFPLALLLVYLVLAAQ- 899

Query: 364  WRASIIPL---LAVPISIIGTFAVMHLFGFSINALSLFGLVLAIGIVVDDAIVVVENVER 420
            + + ++P+   L VP+ I+     + L G   N  +  GL++ +G+   +AI++VE    
Sbjct: 900  YESLLLPIAIILIVPMGIMAALTGVWLTGGDNNVFTQIGLIVLVGLSAKNAILIVEFARE 959

Query: 421  NIENGLSPRDATLKAMREVTGPIIAIALVLCAVFVPIAFISGLTGQFYRQFALTIAFSTV 480
               +G +   A ++A R    PI+  ++      VP+   +G   +      + +    +
Sbjct: 960  LELSGSNAVSAAIEASRLRLRPILMTSMAFIMGVVPLVTSTGAGAEMRSAMGVAVFAGMI 1019

Query: 481  -ISAFNSLTLSPALAVTLLRGEG 502
             ++AF  + ++P   V + +  G
Sbjct: 1020 GVTAF-GIFMTPVFYVLIRKLSG 1041