Pairwise Alignments

Query, 592 a.a., ABC transporter, transmembrane region (NCBI) from Rhodospirillum rubrum S1H

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  220 bits (561), Expect = 1e-61
 Identities = 164/488 (33%), Positives = 251/488 (51%), Gaps = 28/488 (5%)

Query: 101 RLRLAVAEHLMTLPGAFFQGKDSGRLTHVFMSDVT-QIEQFPGLILPRLVSLV--GLSLA 157
           ++R  +  H M +P  FF  + +G L    +S +T   EQ  G     LVS+V  G S+ 
Sbjct: 99  QMRRRLFNHFMHMPVRFFDQESTGGL----LSRITYDSEQVAGATSRALVSIVREGASII 154

Query: 158 AVVAAL-WADWRLGLVL---GATIALGIGGLAVGERFQEKATAARAEAMATLNSRTLEFL 213
            ++  + W  W+L LVL      +A  I    V +RF+ K +     AM  + S   + L
Sbjct: 155 GLLTLMFWNSWQLSLVLIVVAPVVAFAIS--FVSKRFR-KISRNMQTAMGHVTSSAEQML 211

Query: 214 SGIHVIRSFGLGARRSLRLGEAIEGARKTSKALTARYVVAAILVPLIVAVGCAMVISLAI 273
            G  V+ S+G       R  +     R+ +  L +   +A  ++ +I ++    V+ LA 
Sbjct: 212 KGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLAS 271

Query: 274 LFLSLGWMDPFGFLFFVFVCLRLTDPIRDLVDFSSILQQMVGSAGRLLDLLATPVEAEGT 333
           +      + P  F         L  P++ L   +S  Q+ + +   L  L+    E +  
Sbjct: 272 VDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG 331

Query: 334 SPAPS--DRTVRFEEVGFAHGG-EAPILDGLSFVLAPGTITALVGGTGAGKTTALRLLSR 390
                  +  V  ++V F + G E P L  +SF +  G   ALVG +G+GK+T   L +R
Sbjct: 332 KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTR 391

Query: 391 HWTPTKGRVTVGGVD-----LSSLSRHAFSNLVGIVSQTVVLFSLSARDNIRLVRP-QAT 444
            +    G + + G D     L++L RH       +VSQ V LF+ +  +NI      + T
Sbjct: 392 FYDVDSGSICLDGHDVRDYKLTNLRRH-----FALVSQNVHLFNDTIANNIAYAAEGEYT 446

Query: 445 DAEVERAARAARCDGFIKAMPQGYDTLLVNAGATLSGGERQRLALARLFLRDCPILLFDE 504
             ++E+AAR A    FI+ MPQG DT++   G +LSGG+RQR+A+AR  LRD P+L+ DE
Sbjct: 447 REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDE 506

Query: 505 ATSALDVENEHLVQEAMSELVRGRTVLVVAHRLWTIKGADQILVLDQGRIIERGDHDALI 564
           ATSALD E+E  +Q A+ EL + +TVLV+AHRL TI+ AD+ILV+D+G IIERG H  L+
Sbjct: 507 ATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566

Query: 565 AAEGFYHQ 572
           A +G Y Q
Sbjct: 567 AQDGAYAQ 574