Pairwise Alignments

Query, 592 a.a., ABC transporter, transmembrane region (NCBI) from Rhodospirillum rubrum S1H

Subject, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  222 bits (566), Expect = 4e-62
 Identities = 152/482 (31%), Positives = 249/482 (51%), Gaps = 7/482 (1%)

Query: 98  MTARLRLAVAEHLMTLPGAFFQGKDSGRLTHVFMSDVTQIEQF-PGLILPRLVSLVGLSL 156
           + A L   +  HL+ LP  +F+ + +G++    + ++ QI QF  G  L  L+ L+ +++
Sbjct: 236 VNAELSGRLYRHLVGLPLTYFKQRQTGQII-ARVREMAQIRQFLTGSTLMLLLDLIFVTV 294

Query: 157 AAVVAALWADWRLGLVLGATIALGIGGLAVGERFQEKATAARAEAMATLNSRTLEFLSGI 216
              V   +A     LV+G+ +   +  L  G   ++K  +   E+ A   +   E ++GI
Sbjct: 295 FLAVMFHYASTLTWLVIGSLVIYFVLWLIAGPLIRKKVES-EYESDANATTFLTEAVTGI 353

Query: 217 HVIRSFGLGARRSLRLGEAIEGARKTSKALTARYVVAAILVPLIVAVGCAMVISLAILFL 276
             I++     R   +    +      S       ++A   + L+  +  A+++   +  +
Sbjct: 354 ETIKTTATEHRFLEQWQRILSQQLNRSFDAQKSGLIAGQAIALVQKLTAALLLWWGVSAV 413

Query: 277 SLGWMDPFGFLFFVFVCLRLTDPIRDLVDFSSILQQMVGSAGRLLDLLATPVE--AEGTS 334
             G + P   + F  +   +T P+  L       Q  + +  R+ D+L  P E   +G +
Sbjct: 414 LKGEITPGQLVAFNMLAGHVTQPVLRLAQIWQDFQHTLIALRRVGDILDEPRENSKQGLA 473

Query: 335 PAPS-DRTVRFEEVGFAHGGEAP-ILDGLSFVLAPGTITALVGGTGAGKTTALRLLSRHW 392
             P  D  + F  + F +  +AP +L  LS  + PG    + G +G+GK+T  RLL R +
Sbjct: 474 SVPELDGGIEFSNIRFRYHQDAPEVLANLSLKIKPGQFIGVTGPSGSGKSTLTRLLQRLY 533

Query: 393 TPTKGRVTVGGVDLSSLSRHAFSNLVGIVSQTVVLFSLSARDNIRLVRPQATDAEVERAA 452
            P  G+V V G+DL+     +    + +V Q  +LFS S  DNIRL +PQA+D E+  AA
Sbjct: 534 VPQHGQVLVDGMDLAIADPVSLRRNMSVVLQESILFSGSVADNIRLCKPQASDEEIRHAA 593

Query: 453 RAARCDGFIKAMPQGYDTLLVNAGATLSGGERQRLALARLFLRDCPILLFDEATSALDVE 512
           + A    FI+ +P G++  +   GA LSGG+RQR+ALAR  L +  ILL DEATSALD  
Sbjct: 594 QLAGALAFIEGLPHGFNQPVGEKGAALSGGQRQRIALARALLVNPRILLLDEATSALDYN 653

Query: 513 NEHLVQEAMSELVRGRTVLVVAHRLWTIKGADQILVLDQGRIIERGDHDALIAAEGFYHQ 572
           +E  +   M E+ RGRTV+ +AHRL TI+ AD I VLD+G++ E G H+ L+A +G Y +
Sbjct: 654 SEASIMSNMDEICRGRTVISIAHRLNTIRHADNIFVLDKGQVAESGTHEELLAQQGLYAK 713

Query: 573 SW 574
            W
Sbjct: 714 LW 715