Pairwise Alignments

Query, 384 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (NCBI) from Rhodospirillum rubrum S1H

Subject, 376 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

 Score =  392 bits (1008), Expect = e-114
 Identities = 207/369 (56%), Positives = 263/369 (71%), Gaps = 7/369 (1%)

Query: 1   MSVRTYRDISRRVSRKIRVGSVFVGGDAPVSVQTMTNTLTTDVAATVAQIRRAQEAGADI 60
           MS++    I RR S +I VG V +G  AP++VQ+MTNT TTDVAATVAQI+  ++ GADI
Sbjct: 1   MSMQHESPIKRRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVAATVAQIKSLEKVGADI 60

Query: 61  VRVSCPDEESTAALKAIISQVEVPIVADIHFHYKRAIEAAEAGAACLRINPGNIGSAERV 120
           VRVS P  E+  A K I  QV VP+VADIHF Y+ A++ AE G  CLRINPGNIG+  R+
Sbjct: 61  VRVSVPTMEAAEAFKLIKQQVSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEARI 120

Query: 121 REVVRAAKDHGCSMRIGVNAGSLEKELLEKYGEPCPEAMVESALSHARILEDNDFTEFKI 180
           R VV  A+D G  +RIGVN GSLEK+L  KYGEP PEA+VESA+ H  IL+  +F +FK+
Sbjct: 121 RSVVDCARDKGIPIRIGVNGGSLEKDLQLKYGEPTPEALVESAMRHVDILDRLNFDQFKV 180

Query: 181 SVKASDAFLAVAAYKALAEACDYPLHLGITEAGGLRGGTVKSAIGIGSMLWAGIGDTIRV 240
           SVKASD FLAV +Y+ LA+  D PLHLGITEAGG R G+VKSA+G+G +L  GIGDT+R+
Sbjct: 181 SVKASDVFLAVDSYRLLAKKIDQPLHLGITEAGGARAGSVKSAVGLGMLLAEGIGDTLRI 240

Query: 241 SLSAQPEEEVKVGFEILKSLNLRHRGVRVVSCPSCARQGFDVIKTVEVLESRLSHIQTPI 300
           SL+A P EE+KVGF+ILKSL +R RG+  ++CPSC+RQ FDVI TV  LE RL  + TP+
Sbjct: 241 SLAADPVEEIKVGFDILKSLRIRSRGINFIACPSCSRQEFDVIGTVNALEQRLEDVLTPM 300

Query: 301 TLSIIGCVVNGPGEARETDIGLTGGGNLAKEGALNKVYVSGI-PDHTINNEAMVDHLVAL 359
            +SIIGCVVNGPGEA  + +GL G     K+ A    Y  G+      +N+ +V  L A 
Sbjct: 301 DVSIIGCVVNGPGEAEVSHLGLAGSN---KKSAF---YEDGVRQKERFDNDDLVAQLEAK 354

Query: 360 VEKKAAEIE 368
           +  KAA ++
Sbjct: 355 IRAKAARLD 363