Pairwise Alignments

Query, 388 a.a., Predicted signal transduction protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 274 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 63.5 bits (153), Expect = 7e-15
 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 6/204 (2%)

Query: 133 LAASLRTLPSPPDLYLRLTAAMADPAVNTSTIARMIAEDMAMTAELLKITNSSYFALPSR 192
           L + +  LP  P     L   + D       IA  ++ D  ++A++L++ N +Y+     
Sbjct: 6   LLSRVDELPRLPKAISELLEVVNDDNATVKNIATKVSRDPLISAKVLRLANCAYYGHSRE 65

Query: 193 ITTAAQAVRLLGLETVCVLVLHAGIFRQFQGHPGLGEILRALSGHGVAKGLLAQKLAAED 252
           + +  +AV  LG++T+  LVL + +        G+   L    G      L +Q++A   
Sbjct: 66  VGSIDEAVVRLGMQTLRTLVLASAVMGAVPKCNGVD--LAHFWGQTFEIALYSQEMAKRC 123

Query: 253 GADEAVRAQAHCAGMMADIGALVLLDAYPDAFQTMIAKAGRGK-LEAVERAAFGASHAQL 311
           G       +A   G++  IG L++    P+  + +     +GK   A ER   G     +
Sbjct: 124 GVQP---DEAFTCGILHRIGDLLIAAISPEDAEKITEAVAQGKDKHAFERELLGYDSPDI 180

Query: 312 GAFILGLWGFPDPVIEAVLYQWHP 335
           GA +   W F   +++ +L+Q HP
Sbjct: 181 GALLAQNWKFTPALVQGILFQDHP 204



 Score = 24.3 bits (51), Expect = 0.004
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 1   MMQTILFVD-----DDINLLQALQRMLRGYRAEWEMVFVDDPRKALALLATRR 48
           ++Q ILF D     +  + L AL  +     A+W+ +  DD    L+ LAT++
Sbjct: 194 LVQGILFQDHPKDSNPFSKLAALLCLAHKVLADWDTIEDDDKTSWLSQLATKK 246