Pairwise Alignments

Query, 559 a.a., Na+/solute symporter (NCBI) from Rhodospirillum rubrum S1H

Subject, 567 a.a., cation acetate symporter from Vibrio cholerae E7946 ATCC 55056

 Score =  167 bits (423), Expect = 1e-45
 Identities = 139/503 (27%), Positives = 224/503 (44%), Gaps = 66/503 (13%)

Query: 44  IAMFVAFVIGTLFITY-----WAARRTKSAKDFYAAGGGITGFQNGLAIAGDYMSAASFL 98
           I  +   ++G  F  Y     WA  R  S  +FY AGGG+    NG+A A D+MSAASF+
Sbjct: 3   IQTWTFILVGITFALYIGIAIWA--RAGSTSEFYVAGGGVHPVANGMATAADWMSAASFI 60

Query: 99  GIAGLVFTSGFDGLIYSIGFLVGWPVIMFLVAERLRNLGKYTFADVASFRLGQGPIRSMA 158
            +AG++   G+DG +Y +G+  G+ ++   +A  LR  GK+T  D    R      R +A
Sbjct: 61  SMAGIISFIGYDGTVYLMGWTGGYVLLALCLAPYLRKFGKFTVPDFIGDRYYSRTARMVA 120

Query: 159 ASGTLVVVILYLIAQMVGAGKLIELLFGLDYSTAVVLVGVLMVSYVMFGGMLATTWVQII 218
               + +   Y+  QM G G +      +D +  +V+   ++  Y + GGM   T+ Q+ 
Sbjct: 121 VFCAIFISFTYVAGQMRGVGVVFARFLEVDINVGIVIGMAIVFFYAVMGGMKGITYTQVA 180

Query: 219 KAVLL----LSGASFMAIMV----LVSFGFSPEALFAKAVEVHAKKTLLMAPGGLV---- 266
           +  +L    L  A F ++M+    +   GF           ++    L +  G       
Sbjct: 181 QYCVLIFAFLVPAIFTSLMMTGNPIPQIGFGSTLTGTDDYLLNKLDGLAVELGFTAYTDG 240

Query: 267 -SDPIDAISLGIALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILT-FIIG 324
               +D   +  ALM GTAGLPH+++RFFTV    +AR S  +A  FI + Y     +  
Sbjct: 241 SKSMVDVFFICAALMVGTAGLPHVIIRFFTVPKVSDARVSAGWALVFIAFLYTTAPAVAA 300

Query: 325 FGAIVMV--LNQPEFMA-------------------------ADGKGIAGGS-------N 350
           F  + M+  +N P+                             DG+    G        N
Sbjct: 301 FARVNMIDTINGPDMQGVTAAEAPTWYRNWESTGLVKWEDKNGDGRMFYSGDARNEMTIN 360

Query: 351 MAAIHLAH---AVGGNIFLGFISAVAFATILAVVSGLTLSGASAVSHDLYASVWRKGRVS 407
              I LA    A   N  +  ++A   A  L+  +GL L  ++A+SHDL    + K  ++
Sbjct: 361 NDIIVLASPEIAKLPNWVVALLAAGGLAAALSTAAGLLLVISTAISHDLLKKGF-KPDMT 419

Query: 408 ERDEIRVSKITTVGLGVVAILLGI---AFESQNIAFMVGLAFAIAASANFPILFMSMFWK 464
           ++ E+  ++I      V A  LGI    F +Q +AF    AF +AA++ FP + + +F+K
Sbjct: 420 DKQELLAARIAAALAIVGAGYLGINPPGFVAQVVAF----AFGLAAASFFPAIILGIFYK 475

Query: 465 GLTTRGAFIGGFAGLISATVLVI 487
            +   GA IG  AG+      +I
Sbjct: 476 KMNKEGAIIGMLAGITFTAAYII 498