Pairwise Alignments

Query, 736 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  224 bits (570), Expect = 1e-62
 Identities = 164/573 (28%), Positives = 271/573 (47%), Gaps = 87/573 (15%)

Query: 28  LDRLPVSRKLFALVLVSLLGIGATAILALSQVHDVMMEDRRAKVRAIVDLAFSQTADLAD 87
           L+ + VS KL A+V+V ++G  +   ++ + + + ++ +R A+++A++    SQ A L  
Sbjct: 4   LENIKVSYKLAAIVIVGIVGFLSLLFISANALKENLVAEREARLKAVIQSTLSQVAYLNQ 63

Query: 88  RAARGAITSEAAQAGAIEILRRARYDGGEYLFIIDTKGRSVMHPLAPEMEGKDMSGV-KD 146
                 +  E AQ  A  ++   R+DG  Y+F+ID    +V+HP+  ++ G+ M    KD
Sbjct: 64  -----TLPKEQAQEQAKALINALRFDGNNYMFVIDESRYTVVHPIRQDLVGQQMGNPGKD 118

Query: 147 AKGTAMFAEMARLAVSQGSGFFAYEWQRGAQGTASPKISYVRRLPQWDWVIGSGIYIDDV 206
            +G   F  M  LA +   G   Y W +  QG  + K+S+V     W W++GSG+ +DD+
Sbjct: 119 TEGQFWFT-MIDLARNGQQGSLIYPW-KNQQGNPADKLSFVNGFAPWGWILGSGMLLDDI 176

Query: 207 EAAFTRQALIFAAVVAAVVAVLLGLSLVIGRGIAGPLVAMTGRMRKMASGDLETAIPGEA 266
           E A  +Q L        V  V++GL +VI R +  PL  +   M+K+A GDL   IP   
Sbjct: 177 EHAVYQQFLRMGFATLIVTLVMIGLGVVISRAVIQPLDTIKDVMKKVAQGDLTAQIPVLG 236

Query: 267 TADQRRDEVGEMAGALVVFRETLRDAKRLAEEHRHEEEQKHIRRQQVDEQIRAFEMTVVR 326
                +DE+G +A                               Q+++  I A    +V 
Sbjct: 237 -----KDELGIVA-------------------------------QRINNSIAAVHDALVE 260

Query: 327 LLDGLVSADQSVRSTTTRLVDGARDT-------MSEANEVAASAEHASANVETVASAAEE 379
                V +  SV     R+   A +T         + +++A +    +A V  VA  AE+
Sbjct: 261 ----SVQSASSVAEAAIRIASSAEETSQAVVSQRDQLSQLATAMNQMTATVADVAGHAED 316

Query: 380 LSASIQEIARQ-------VEQSSGVARRAVEETGEATKGIAELEERVGQITDIVKLISDI 432
            +    + +++       V  S    R    E G AT  + +L+E V QI+++  +IS I
Sbjct: 317 TARDTLDASKEANLGDKDVHSSVDSIRALSVELGVATDQVNKLKEGVMQISEVTSVISGI 376

Query: 433 ASQTNLLALNATIEAARAGDAGKGFAVVAEEVKNLANQTQKATKDITGRIADVEEATTRS 492
           + QTNLLALNA IEAARAGD G+GFAVVA+EV+NLA++T  +T +I   I  +++    +
Sbjct: 377 SEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTHHSTDEIQTMINRLQQLAVST 436

Query: 493 VEAIR------------------DVSKVIGEIHEIS---ASISAAVEEQGAATREIARNV 531
             A++                  D+S ++  I  +S     I+ A EEQ A   E+ RNV
Sbjct: 437 ASAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSDKATQIATAAEEQSAVAEEMNRNV 496

Query: 532 DEAATGTNRVSSAIGRVRAAAEEANSEAGDMER 564
               +G N  +  + +      E + +  D+ R
Sbjct: 497 ----SGINDAALEMSQAATYLAEESEKLADLSR 525