Pairwise Alignments

Query, 736 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  223 bits (567), Expect = 3e-62
 Identities = 168/596 (28%), Positives = 282/596 (47%), Gaps = 96/596 (16%)

Query: 19  QVISDKIMI-----LDRLPVSRKLFALVLVSLLGIGAT-AILALSQVHDVMMEDRRAKVR 72
           +VIS  +M      L  L +  +LF L +V L+ +    AI+     HD+M+E ++ + +
Sbjct: 2   RVISQGVMFMTSVSLRHLSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLE-KQVQTQ 60

Query: 73  AIVDLAFSQTADLADRAARGAITSEAAQAGAIEILRRARYDGGEYLFIIDTKGRSVMHPL 132
            +V+ A++     A +A +G +T+E AQ  A + + + RY   +Y +I D +   VMHP+
Sbjct: 61  HLVESAYTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPM 120

Query: 133 APEMEGKDMSGVKDAKGTAMFAEMARLAVSQGSGFFAYEWQRGAQGTASPKISYVRRLPQ 192
            P++ GKD+   KD  G A+F EM  +      G   Y+W +        K+SYV+    
Sbjct: 121 KPDLNGKDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKP 180

Query: 193 WDWVIGSGIYIDDVEAAFTRQALIFAAVVAAVVAVLLGLSLVIGRGIAGPLVAMTGRMRK 252
           W W+IG+GIY+DDV A   ++       V   + VL+ L+ +IGR I  P       ++ 
Sbjct: 181 WGWIIGTGIYVDDVNALVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKN 240

Query: 253 MASGDLETAIPGEATADQRRDEVGEMAGALVVFRETLRDAKRLAEEHRHEEEQKHIRRQQ 312
           +A G+ +       T    +DE+ ++A A  +F   +R                HI +  
Sbjct: 241 IAQGEGDLTRQLTVTG---KDELAQIAQAFNLFTNKIR----------------HIIQ-- 279

Query: 313 VDEQIRAFEMTVVRLLDGLVSADQSVRSTTTRLVDGARDTMSEANEVAAS-AEHASANVE 371
                   E+T +                 T  V G+ D +++  + A+S A      V+
Sbjct: 280 --------EITPI-----------------TESVTGSADELTQVAQSASSKAYDQHQAVD 314

Query: 372 TVASAAEELSASIQEIARQVEQSSGVARRAVEETGEATKGIAELEERVGQITD------- 424
           TVASA  +L AS QE+A+   Q+   A  A +   +  + I     ++  + D       
Sbjct: 315 TVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTRTEQ 374

Query: 425 --------------IVKLISDIASQTNLLALNATIEAARAGDAGKGFAVVAEEVKNLANQ 470
                         ++++I  +A QTNLLALNA IEAARAG+ G+GFAVVA+EV+ LA +
Sbjct: 375 ETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLATR 434

Query: 471 TQKATKDITGRIADVE---EATTRSVEAIRDVSKVIGE--------IHEISAS------- 512
           TQ +T +I   IA ++   ++ ++S+   +  S+V  +        ++EI A        
Sbjct: 435 TQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTILSF 494

Query: 513 ---ISAAVEEQGAATREIARNVDEAATGTNRVSSAIGRVRAAAEEANSEAGDMERA 565
              I+ A  +Q  AT EI RN+ + A  + + S+   +V AA+E+       + R+
Sbjct: 495 NQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARS 550



 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 20/108 (18%), Positives = 51/108 (47%), Gaps = 1/108 (0%)

Query: 284 VFRETLRDAKRLAEEHRHEEEQKHIRRQQVDEQIRAFEMTVVRLLDGLVSADQSVRSTTT 343
           +  +  + A+ +++     ++Q  + +QQ  EQ +     +   +  ++S +Q +   + 
Sbjct: 445 IIAQLQKKAQSVSQSMTQTQQQSRVTQQQA-EQAQQMLNEIEAQIKTILSFNQHIAGASA 503

Query: 344 RLVDGARDTMSEANEVAASAEHASANVETVASAAEELSASIQEIARQV 391
           +  +   +      ++A  +  ASA    VA+A+E+L  + Q +AR +
Sbjct: 504 QQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSL 551