Pairwise Alignments

Query, 302 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  348 bits (893), Expect = e-101
 Identities = 167/280 (59%), Positives = 213/280 (76%), Gaps = 2/280 (0%)

Query: 23  RSLWKNARRRFYGNRAAMTSLVILIAILALAVVGPLLSPHPYDEIYWEAIQMPPDFANGF 82
           RSLW++AR RF  N+AAM SL +L+ I    V  P+ S + Y++  W A+   P   +  
Sbjct: 23  RSLWQDARIRFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEH-- 80

Query: 83  WFGTDGNGRDLFVRTLYGARVSLAVGVIATTVSLVIGVVYGAIAGYFGGRVDMLMMRFVD 142
           WFGTD  GRDLFVRTL G R+SL VG++   V+++IG +YGA +G+ GGR D +MMR ++
Sbjct: 81  WFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILE 140

Query: 143 VLYSLPFMFFVIMLMVVFGRNIFLIFVALGAVEWLTMARIVRGQTMAVTRKEFIEAAHAI 202
           +LY++PFMF VI+L+  FGRNI LIFVA+GA+ WL MARIVRGQT+++  KEFIEAAH  
Sbjct: 141 ILYAIPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVC 200

Query: 203 GVSDATIIRRHVIPNILGPVIVYATLTIPQVVLTESFLSFLGLGVQEPLTSWGVLISEGA 262
           GVS   II RH++PN+LG V VY+TL IP ++LTESFLSFLGLGVQEP+TSWG L+ EGA
Sbjct: 201 GVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGA 260

Query: 263 RVLEVSPWMLLFPAFFLALTLLCFNFIGDGLRDALDPKDR 302
             +EV+ W LLFPA F+ LTL CFN++GDGLRDALDPKDR
Sbjct: 261 NTMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPKDR 300