Pairwise Alignments

Query, 541 a.a., TPR domain protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 363 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 58.5 bits (140), Expect = 4e-13
 Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 4/182 (2%)

Query: 61  GAFEQAEGRSAAAAGLFRRAMARCGDDPLMLHNLGVALRGAGLIDAAAAAWEGVLRGCPQ 120
           G+ +  E   AA     R     C     + +N G+ L        A A++   L   PQ
Sbjct: 7   GSHQSLEALLAAYDFRLRHEPRNC----TLWNNRGILLERLNRWTEALASYNCALEITPQ 62

Query: 121 RFATLFNLARLRDDQGRGEEALALYRRACLADPAASDAAYNLGNLLARRGALAQAAEVLG 180
           R   L N A + +  GR  EA+  Y +A   D    +   N G +L + G L  A     
Sbjct: 63  RQEALNNRAIVLEHLGRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQ 122

Query: 181 KAASVTPHDARIQTNLGIVLRRLGDAAGALACQRRAVALDPDLADAQWNLANLLLALDDY 240
           +A ++  H A+   N G  L + G    A+    ++VA+DPD + A   L  + L++D  
Sbjct: 123 QAIALAAHYAQAWANCGFALWQQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIYLSVDQP 182

Query: 241 DE 242
           D+
Sbjct: 183 DQ 184



 Score = 58.2 bits (139), Expect = 5e-13
 Identities = 45/145 (31%), Positives = 63/145 (43%)

Query: 104 IDAAAAAWEGVLRGCPQRFATLFNLARLRDDQGRGEEALALYRRACLADPAASDAAYNLG 163
           ++A  AA++  LR  P+      N   L +   R  EALA Y  A    P   +A  N  
Sbjct: 12  LEALLAAYDFRLRHEPRNCTLWNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRA 71

Query: 164 NLLARRGALAQAAEVLGKAASVTPHDARIQTNLGIVLRRLGDAAGALACQRRAVALDPDL 223
            +L   G L +A E   +A ++      +  N GIVLR+LG    A+A  ++A+AL    
Sbjct: 72  IVLEHLGRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAHY 131

Query: 224 ADAQWNLANLLLALDDYDEGFARYE 248
           A A  N    L     Y E    YE
Sbjct: 132 AQAWANCGFALWQQGRYREAVRHYE 156



 Score = 46.6 bits (109), Expect = 2e-09
 Identities = 53/212 (25%), Positives = 83/212 (39%), Gaps = 9/212 (4%)

Query: 91  LHNLGVALRGAGLIDAAAAAWEGVLRGCPQRFATLFNLARLRDDQGRGEEALALYRRACL 150
           L+N  + L   G +  A  ++E  L    Q+     N   +    GR E+A+A Y++A  
Sbjct: 67  LNNRAIVLEHLGRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIA 126

Query: 151 ADPAASDAAYNLGNLLARRGALAQAAEVLGKAASVTPHDARIQTNLGIVLRRLGDAAGAL 210
                + A  N G  L ++G   +A     ++ ++ P  +     LG +   +     AL
Sbjct: 127 LAAHYAQAWANCGFALWQQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQAL 186

Query: 211 ACQRRAVALDPDLADAQWNLANLLLALDDYDEGFARYEWRKRRAPWRLVDPPLAEWRGED 270
            C  +A+AL P  A A     + L  L  Y      YE  +      L+   L+  RG  
Sbjct: 187 RCLDQAIALQPQQATAWTWRGHALYNLGQYAAALTSYENAELLGDRPLL---LSIQRGHT 243

Query: 271 LAGRRLLVGLEQGAGDMIQAARFLPVLAGRGA 302
           LA       LE+    +   A  LP L G  A
Sbjct: 244 LA------QLERYEEALASYAAILPQLTGEAA 269



 Score = 38.5 bits (88), Expect = 4e-07
 Identities = 57/241 (23%), Positives = 81/241 (33%), Gaps = 70/241 (29%)

Query: 68  GRSAAAAGLFRRAMARCGDDPLMLHNLGVALRGAGLIDAAAAAWEGVLRGCPQRFATLFN 127
           GR   A   + +A+A     P + +N G+ LR  G ++ A A+++  +           N
Sbjct: 78  GRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAHYAQAWAN 137

Query: 128 LARLRDDQGRGEEALALYRRACLADPAASDA----------------------------- 158
                  QGR  EA+  Y ++   DP  S A                             
Sbjct: 138 CGFALWQQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQAIALQP 197

Query: 159 ------------AYNLGNLLA---------------------RRGALAQAA---EVLGKA 182
                        YNLG   A                     R   LAQ     E L   
Sbjct: 198 QQATAWTWRGHALYNLGQYAAALTSYENAELLGDRPLLLSIQRGHTLAQLERYEEALASY 257

Query: 183 ASVTPH-----DARIQTNLGIVLRRLGDAAGALACQRRAVALDPDLADAQWNLANLLLAL 237
           A++ P       A +    G+V   L D   ALA   +A+A +PDLA+A +N A L   L
Sbjct: 258 AAILPQLTGEAAAEVAYYQGLVWAYLQDWTAALAAFDQAIAGNPDLAEAWYNRAALHARL 317

Query: 238 D 238
           D
Sbjct: 318 D 318



 Score = 35.0 bits (79), Expect = 5e-06
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 137 RGEEALALYRRAC--LADPAASDAAYNLGNLLARRGALAQAAEVLGKAASVTPHDARIQT 194
           R EEALA Y      L   AA++ AY  G + A       A     +A +  P  A    
Sbjct: 249 RYEEALASYAAILPQLTGEAAAEVAYYQGLVWAYLQDWTAALAAFDQAIAGNPDLAEAWY 308

Query: 195 NLGIVLRRLGDAAGALACQRRAVALDPD 222
           N   +  RL     A+A  ++A+ALDPD
Sbjct: 309 NRAALHARLDQPVAAIADLQQAIALDPD 336