Pairwise Alignments

Query, 595 a.a., TPR repeat (NCBI) from Rhodospirillum rubrum S1H

Subject, 371 a.a., TPR domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 62.0 bits (149), Expect = 4e-14
 Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 140 PDEAELHRRQGVLLRRAGRAAQAIAPWRALVALRPGDAAAWSSLGAGLGESGLDEEAEKA 199
           P+  E   ++  LL R G   +A A   A++A  P  A AW   G    + GL +EAE  
Sbjct: 103 PEMVEPRLQRARLLVRRGMPNEAAADIEAVLAASPQHARAWELAGMVAFDRGLLDEAEAD 162

Query: 200 LRRAVALAADEPDWTYNLAHFLIERD---RLEDALPLLDAAVARAPERAHYHTNLGVCRL 256
             RA+ L   +PD     AH     D   R + A  +  AA+ R P+    H NLGV   
Sbjct: 163 FTRAITL---DPDLASCYAHLGAVHDYKGRPDLARDVYAAALVRFPQSGELHNNLGVAFS 219

Query: 257 GLGDIKGAIAAHRQALALDPDEPEARYDLAWALLLAGAWEEGWAA 301
            LGD   A+    +A+ L      +  ++  AL   G ++E + A
Sbjct: 220 MLGDDASALHHFHEAVVLGASSERSWNNMGLALCRLGRFDEAFEA 264



 Score = 50.8 bits (120), Expect = 9e-11
 Identities = 56/194 (28%), Positives = 74/194 (38%), Gaps = 8/194 (4%)

Query: 53  RILLGLGQPTAALESLGAAVAADP--TRLDWLADLAVALAGARRPAEA--LSAAEGLPAT 108
           R+L+  G P  A   + A +AA P   R   LA +     G    AEA    A    P  
Sbjct: 114 RLLVRRGMPNEAAADIEAVLAASPQHARAWELAGMVAFDRGLLDEAEADFTRAITLDPDL 173

Query: 109 AGALGFRADRLEELGRRDQAIALLDDALRRHPDEAELHRRQGVLLRRAGRAAQAIAPWRA 168
           A          +  GR D A  +   AL R P   ELH   GV     G  A A+  +  
Sbjct: 174 ASCYAHLGAVHDYKGRPDLARDVYAAALVRFPQSGELHNNLGVAFSMLGDDASALHHFHE 233

Query: 169 LVALRPGDAAAWSSLGAGLGESGLDEEAEKALRRAVALAADEPDWTYNLAHFLIERDRLE 228
            V L      +W+++G  L   G  +EA +A R A   AA       NL +F +      
Sbjct: 234 AVVLGASSERSWNNMGLALCRLGRFDEAFEAFRNAGGEAAAH----NNLGYFFLVNGDAS 289

Query: 229 DALPLLDAAVARAP 242
            A+  L  AV   P
Sbjct: 290 LAVQHLQRAVELEP 303



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 25  GAPAEARDLYRLVLDRHPGHGPALAGLGRILLGLGQPTAALESLGAAVAADPTRLDWLAD 84
           G P  ARD+Y   L R P  G     LG     LG   +AL     AV    +      +
Sbjct: 188 GRPDLARDVYAAALVRFPQSGELHNNLGVAFSMLGDDASALHHFHEAVVLGASSERSWNN 247

Query: 85  LAVALAGARRPAEALSA---AEGLPATAGALGF 114
           + +AL    R  EA  A   A G  A    LG+
Sbjct: 248 MGLALCRLGRFDEAFEAFRNAGGEAAAHNNLGY 280