Pairwise Alignments

Query, 272 a.a., MotA/TolQ/ExbB proton channel (NCBI) from Rhodospirillum rubrum S1H

Subject, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

 Score =  181 bits (460), Expect = 1e-50
 Identities = 101/251 (40%), Positives = 150/251 (59%), Gaps = 4/251 (1%)

Query: 18  DLATVAGIGGALALIVTALVLGGSPRAFFDLPSILIVVLGTLAVTVASFTVKDIGVTVAM 77
           DLAT+ G+ G +A ++ A+VLGGS   F D+ S+LIVV G++ V +  F +        +
Sbjct: 2   DLATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAKI 61

Query: 78  LRPALTQSTRPPRAAALKILALADFCRKSGILKIQGPILESLRDEPFLHKGMGLVVDGLP 137
              A       P     KI+ +AD  RK G L ++    E     PF+ KG+ L+VDG  
Sbjct: 62  AGKAFMFKADAPEDLIAKIVEMADAARKGGFLALE----EMEIPNPFMQKGIDLLVDGHD 117

Query: 138 EPDVEAILAQDIHATQQRLARATSVLRRAAEVAPAMGLIGTLIGLVQMLGNLNNPAVIGP 197
              V A L +DI  T +R ++ T V R   +VAPAMG+IGTL+GLV ML N+++P  IGP
Sbjct: 118 ADVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIGP 177

Query: 198 SMAVALLTTFYGAIMGNVVFLPLAGKLERNGADDTLVRRIYLVGILSVARKENPRRLEML 257
           +MAVALLTT YGA++ N++F P+A KL      +TL RR+ + G+L++   +NPR ++  
Sbjct: 178 AMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDSY 237

Query: 258 LNSALPPAQRV 268
           L + L  ++R+
Sbjct: 238 LKNYLNASKRI 248