Pairwise Alignments

Query, 445 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

Subject, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  298 bits (763), Expect = 3e-85
 Identities = 176/400 (44%), Positives = 242/400 (60%), Gaps = 36/400 (9%)

Query: 72  PVVAYGVGTDTQAAVRAIKAGAREYIPLPPDPELIAAVLEAV----TEESHALVYKDPAM 127
           PV+      + Q AV A+K GA +Y+  P  PE++  ++       ++++   V  D   
Sbjct: 79  PVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNMVSRYAPVKSDDNGDAVVADTKS 138

Query: 128 GALVRMAEQIAPSDASVLIVGESGTGKEIIARHIHRKSRRAQGRFIAVNCAAIPEALLES 187
             L+ +A+++A +DA+V+I+G SG+GKE+++R+IH  S R +G FIA+NCAAIP+ +LE+
Sbjct: 139 LKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEA 198

Query: 188 ELFGHEKGAFTGAVARRLGKFEEANGGTLLLDEISEMDVRLQAKLLRVLQEREIDRVGGR 247
            LFG+EKGAFTGAV    GKFE+A GGT+LLDEISEMD+ LQAKLLRVLQERE++R+G R
Sbjct: 199 TLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSR 258

Query: 248 QPIKVDVRILATSNRDMEAEVRAGHFREDLFFRLNVITLALPPLRKRPADIDLLADHFAR 307
           + IK+DVR+LATSNRD++  V+AGHFREDL++RLNV  L  P L +R  DI+ LA+H   
Sbjct: 259 KSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIE 318

Query: 308 KFADLNGVPYRPLADETRQSLRGHSWRGNVRELENTLHRAVLLSSGPRILPEAILLTGGD 367
           +     G+P   +A      L  + W GNVREL+N + RA++LS    I  E ILL G D
Sbjct: 319 RHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILLEGVD 378

Query: 368 ------TANAPAGE--------------------------STLTGSLVGRTVADVERDLI 395
                    A AGE                          S+   S +G  + D E  +I
Sbjct: 379 WHDASSLQQAVAGESMAAPQIKPVAEPEVFKPLVQGGGQNSSSQSSGLGGELRDQEFAII 438

Query: 396 IDTLRHTLGNRTHAATILGISIRTLRNKLKQYTEEGIPVP 435
           +DTL    G R   A  LGIS RTLR KL +  + GI +P
Sbjct: 439 LDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAGIDIP 478